myRT

myRT report for GCA_000292285.1_ASM29228v1

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Seq: ALPA01000047.1 Pseudomonas sp. S13.1.2 contig60, whole genome shotgun sequence (11855 bp)
Overview 1 RT 1: 3187-7756 bp Neighborhood of RT #1 [3187, 8193] TIR-like SLATT_5 RVT-UG17 HNHc Feature: gene Location: 3187-4104 bp Feature: domain Description: TIR-like Location: 3274-3628 bp Feature: domain Description: TIR-like Location: 3274-3628 bp Feature: gene Location: 4213-4875 bp Feature: domain Description: SLATT_5 Location: 4216-4816 bp Feature: domain Description: SLATT_5 Location: 421 6-481 6 bp Feature: gene Location: 5081-6517 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 5351-5966 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 5351 -5966 bp Feature: gene Location: 6832-7275 bp Feature: gene Location: 7522-8193 bp Feature: domain Description: HNHc Note: nucleases Location: 7552-7756 bp Feature: domain Description: HNHc Note: nucleases Location: 7552-7756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR-like (pfam10137), SLATT_5 (pfam18160), RVT-UG17, HNHc (smart00507)

Seq: ALPA01000073.1 Pseudomonas sp. S13.1.2 contig89, whole genome shotgun sequence (9087 bp)
Overview 1 RT 1: 1531-6109 bp Neighborhood of RT #1 [1531, 6109] RVT-Retrons IS5 Feature: gene Location: 1531-2376 bp Feature: gene Location: 2376-2717 bp Feature: gene Location: 3017-4099 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3233-3782 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32 33-3782 bp Feature: gene Location: 4410-5390 bp Feature: domain Description: IS5 Location: 4599-5358 bp Feature: domain Description: IS5 Location: 4599-5358 bp Feature: gene Location: 5672-6109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, IS5 (COG3039)

Seq: ALPA01000159.1 Pseudomonas sp. S13.1.2 contig204, whole genome shotgun sequence (2252 bp)
Overview 1 RT 1: 116-1868 bp Neighborhood of RT #1 [116, 2002] RVT-GII GIIM Feature: gene Location: 116-385 bp Feature: gene Location: 635-2002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968-1583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968-1583 bp Feature: domain Description: GIIM Note: maturase Location: 1643-1868 bp Feature: domain Description: GIIM Note: maturase Location: 1643 -1868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)