myRT

myRT report for GCA_000292525.1_ASM29252v1

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Seq: AEYF01000053.1 Rhizobium sp. CCGE 510 plasmid pRspCCGE510C Contig53, whole genome shotgun sequence (107583 bp)
Overview 1 RT 1: 30373-33696 bp Neighborhood of RT #1 [30373, 33696] COG3415 COG3335 RVT-GII GIIM rve_3 Feature: gene Location: 30373-30657 bp Ori: EJT01220.1 Feature: domain Description: COG3415 Location: 30382-30631 bp Feature: domain Description: COG341 5 Location: 30382-30631 bp Feature: gene Location: 30955-31281 bp Ori: EJT01221.1 Feature: domain Description: COG3335 Location: 30961-31270 bp Feature: domain Description: COG3335 Location: 30961 -31 270 bp Feature: gene Location: 31658-32305 bp Ori: EJT01222.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31661-31925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 661 -31 925 bp Feature: domain Description: GIIM Note: maturase Location: 32006-32231 bp Feature: domain Description: GIIM Note: maturase Location: 32006-32231 bp Feature: gene Location: 32316-32537 bp Ori: EJT01223.1 Feature: domain Description: rve_3 Location: 32382-32490 bp Feature: domain Description: rve_3 Location: 32382-32490 bp Feature: gene Location: 33352-33696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), COG3335 (Transposase ), RVT-GII, GIIM (pfam08388), rve_3 (pfam13683)

Seq: AEYF01000096.1 Rhizobium sp. CCGE 510 Contig96, whole genome shotgun sequence (2329 bp)
Overview 1 RT 1: 163-1492 bp Neighborhood of RT #1 [163, 1689] RVT-GII GIIM Feature: gene Location: 163-1689 bp Ori: EJT00821.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 469-1186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 469-1186 bp Feature: domain Description: GIIM Note: maturase Location: 1261-1492 bp Feature: domain Description: GIIM Note: maturase Location: 12 61-1492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AEYF01000021.1 Rhizobium sp. CCGE 510 Contig21, whole genome shotgun sequence (175205 bp)
Overview 1 RT 1: 285-6573 bp Neighborhood of RT #1 [285, 6573] TetR_N TetR_C_7 PRK08317 RVT-UG16 DUF87 Feature: gene Location: 285-818 bp Ori: EJT04997.1 Feature: domain Description: TetR_N Location: 291-372 bp Feature: domain Description: TetR_N Location: 291-3 72 bp Feature: domain Description: TetR_C_7 Location: 441-789 bp Feature: domain Description: TetR_C_7 Location: 441-789 bp Feature: gene Location: 853-1719 bp Ori: EJT04998.1 Feature: domain Description: PRK08317 Location: 958-1300 bp Feature: domain Description: PRK083 17 Location: 958-13 00 bp Feature: gene Location: 1960-3501 bp Ori: EJT04999.1 Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 2335-2740 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 23 3 5-2740 bp Feature: gene Location: 3498-5534 bp Ori: EJT05000.1 Feature: domain Description: DUF87 Location: 4716-5208 bp Feature: domain Description: DUF87 Location: 4716-5208 bp Feature: gene Location: 6094-6573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TetR_N (pfam00440), TetR_C_7 (pfam14246), PRK08317 (hypothetical protein; Provisional), RVT-UG16, DUF87 (pfam01935)

Seq: AEYF01000044.1 Rhizobium sp. CCGE 510 Contig44, whole genome shotgun sequence (820884 bp)
Overview 1 RT 1: 112269-117062 bp 2 RT 2: 130783-138436 bp Neighborhood of RT #1 [112269, 117091] rmlA RVT_N RVT-GII GIIM RsiW RpoE Neighborhood of RT #2 [130783, 138447] DUF4174 RVT-G2L4 COG5490 PAS_8 CitA BaeS Feature: gene Location: 112269-113135 bp Ori: EJT02632.1 Feature: domain Description: rmlA Location: 112275-113124 bp Feature: domain Description: rmlA Location: 112275-113124 bp Feature: gene Location: 113196-113309 bp Feature: gene Location: 113541-114929 bp Ori: EJT02634.1 Feature: domain Description: RVT_N Location: 113544-113739 bp Feature: domain Description: RVT_N Location: 11354 4 -113739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113793-114456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113793-114 4 56 bp Feature: domain Description: GIIM Note: maturase Location: 114516-114741 bp Feature: domain Description: GIIM Note: maturase Location: 114 516-114 74 1 bp Feature: gene Location: 115731-116534 bp Ori: EJT02635.1 Feature: domain Description: RsiW Location: 115758-116520 bp Feature: domain Description: RsiW Location: 115758-116520 bp Feature: gene Location: 116531-117091 bp Ori: EJT02636.1 Feature: domain Description: RpoE Location: 116579-117062 bp Feature: domain Description: RpoE Location: 116579-117062 bp Feature: gene Location: 130783-130950 bp Feature: gene Location: 131000-131437 bp Ori: EJT02652.1 Feature: domain Description: DUF4174 Location: 131075-131417 bp Feature: domain Description: DUF4 174 Location: 131075-1314 17 bp Feature: gene Location: 132201-133517 bp Ori: EJT02653.1 Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 132444-133053 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 1324 4 4 -133053 bp Feature: gene Location: 133914-134363 bp Ori: EJT02654.1 Feature: domain Description: COG5490 Location: 133917-134361 bp Feature: domain Description: COG54 90 Location: 133917-134 361 bp Feature: gene Location: 134578-138447 bp Ori: EJT02655.1 Feature: domain Description: PAS_8 Location: 136957-137074 bp Feature: domain Description: PAS_8 Location: 136957-137074 bp Feature: domain Description: CitA Location: 137341-137503 bp Feature: domain Description: CitA Location: 13734 1-137503 bp Feature: domain Description: BaeS Location: 137671-138436 bp Feature: domain Description: BaeS Location: 137671-1384 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rmlA (TIGR01207), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RsiW (COG5662), RpoE (COG3343), DUF4174 (pfam13778), RVT-G2L4, COG5490 (Uncharacterized protein ), PAS_8 (pfam13188)
CitA (COG3290), BaeS (COG0642)

Seq: AEYF01000048.1 Rhizobium sp. CCGE 510 plasmid pRspCCGE510C Contig48, whole genome shotgun sequence (393475 bp)
Overview 1 RT 1: 106242-111476 bp 2 RT 2: 343718-348538 bp Neighborhood of RT #1 [106242, 111487] COG5489 RVT-GII GIIM DUF2958 ArdC Neighborhood of RT #2 [343718, 348591] COG5489 RVT-GII GIIM RhaT Feature: gene Location: 106242-106409 bp Feature: gene Location: 106730-107044 bp Ori: EJT01421.1 Feature: domain Description: COG5489 Location: 106733-107036 bp Feature: domain Description: COG5 489 Location: 106733-107036 bp Feature: gene Location: 107670-109196 bp Ori: EJT01422.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107976-108693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107976-108693 bp Feature: domain Description: GIIM Note: maturase Location: 108768-108999 bp Feature: domain Description: GIIM Note: maturase Location: 108768-108999 bp Feature: gene Location: 110077-110463 bp Ori: EJT01423.1 Feature: domain Description: DUF2958 Location: 110086-110392 bp Feature: domain Description: DUF295 8 Location: 110086-110392 bp Feature: gene Location: 110561-111487 bp Ori: EJT01424.1 Feature: domain Description: ArdC Location: 110567-111476 bp Feature: domain Description: ArdC Location: 1105 67-111476 bp Feature: gene Location: 343718-343882 bp Feature: gene Location: 344108-344416 bp Ori: EJT01630.1 Feature: domain Description: COG5489 Location: 344111-344414 bp Feature: domain Description: COG5 489 Location: 344111-344414 bp Feature: gene Location: 345042-346568 bp Ori: EJT01631.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345348-346065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345 348-346065 bp Feature: domain Description: GIIM Note: maturase Location: 346140-346371 bp Feature: domain Description: GIIM Note: maturase Location: 346140-346371 bp Feature: gene Location: 347127-347303 bp Feature: gene Location: 347638-348591 bp Ori: EJT01633.1 Feature: domain Description: RhaT Location: 347653-348538 bp Feature: domain Description: RhaT Location: 34765 3-3485 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5489 (Uncharacterized conserved protein, DUF736 family ), RVT-GII, GIIM (pfam08388), DUF2958 (pfam11171), ArdC (COG4227), RhaT (TIGR00776)

Seq: AEYF01000045.1 Rhizobium sp. CCGE 510 plasmid pRspCCGE510d Contig45, whole genome shotgun sequence (923843 bp)
Overview 1 RT 1: 723572-729110 bp Neighborhood of RT #1 [723572, 729175] HTH_XRE ImmA Beta_protein RVT-UG2 HpaA Feature: gene Location: 723572-724987 bp Ori: EJT02363.1 Feature: domain Description: HTH_XRE Location: 723977-724133 bp Feature: domain Description: HTH_XRE Location: 723977-724133 bp Feature: domain Description: ImmA Location: 724496-724889 bp Feature: domain Description: ImmA Location: 724496 -724889 bp Feature: gene Location: 725002-726147 bp Ori: EJT02364.1 Feature: domain Description: Beta_protein Location: 725014-726016 bp Feature: domain Description: Beta_protein Location: 725014-726 016 bp Feature: gene Location: 726266-727714 bp Ori: EJT02365.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 726455-727370 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 726 455-727370 bp Feature: gene Location: 727741-727941 bp Feature: gene Location: 728279-729175 bp Ori: EJT02367.1 Feature: domain Description: HpaA Location: 728390-729110 bp Feature: domain Description: HpaA Location: 728390-729110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), ImmA (COG2856), Beta_protein (pfam14350), RVT-UG2, HpaA (TIGR02297)