myRT

myRT report for GCA_000295575.2_ASM29557v2

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Seq: JH813093.1 Enterococcus faecium 513 genomic scaffold Scfld679, whole genome shotgun sequence (86817 bp)
Overview 1 RT 1: 14472-19733 bp Neighborhood of RT #1 [14472, 19733] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s Feature: gene Location: 14472-15353 bp Ori: EJY27259.1 Feature: domain Description: CcmA Location: 14475-15345 bp Feature: domain Description: CcmA Location: 1 4475-1 5345 bp Feature: gene Location: 15607-16206 bp Ori: EJY27260.1 Feature: domain Description: AcrR Location: 15625-16111 bp Feature: domain Description: AcrR Location: 1 5625-1 61 1 1 bp Feature: gene Location: 16693-18081 bp Ori: EJY27261.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17014-17629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 701 4-1 7629 bp Feature: domain Description: GIIM Note: maturase Location: 17686-17902 bp Feature: domain Description: GIIM Note: maturase Location: 1 7686-1 7902 bp Feature: gene Location: 18174-19499 bp Ori: EJY27262.1 Feature: domain Description: CE4_DAC_u3_5s Location: 18867-19260 bp Feature: domain Description: CE4_DAC_u3_5s Location: 1 8867-1 9260 bp Feature: gene Location: 19614-19733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), AcrR (COG1309), RVT-GII, GIIM (pfam08388), CE4_DAC_u3_5s (cd10972)

Seq: JH813034.1 Enterococcus faecium 513 genomic scaffold Scfld312, whole genome shotgun sequence (2714 bp)
Overview 1 RT 1: 384-2476 bp Neighborhood of RT #1 [384, 2592] RVT-GII HNHc Feature: gene Location: 384-614 bp Feature: gene Location: 733-2592 bp Ori: EJY29629.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1042-1783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1042 -1783 bp Feature: domain Description: HNHc Note: nucleases Location: 2338-2476 bp Feature: domain Description: HNHc Note: nucleases Location: 2 338-2 476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: JH812930.1 Enterococcus faecium 513 genomic scaffold Scfld50, whole genome shotgun sequence (2685 bp)
Overview 1 RT 1: 745-1744 bp Neighborhood of RT #1 [745, 2571] RVT-GII Feature: gene Location: 745-2571 bp Ori: EJY34255.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JH812940.1 Enterococcus faecium 513 genomic scaffold Scfld66, whole genome shotgun sequence (11323 bp)
Overview 1 RT 1: 4595-8899 bp Neighborhood of RT #1 [4595, 8899] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 Feature: gene Location: 4595-5869 bp Ori: EJY33983.1 Feature: domain Description: PRK09290 Location: 4613-5861 bp Feature: domain Description: PRK09290 Location: 4 613-5861 bp Feature: gene Location: 5970-6284 bp Ori: EJY33984.1 Feature: domain Description: AlbA_2 Location: 6009-6180 bp Feature: domain Description: AlbA_2 Location: 6009-6180 bp Feature: gene Location: 6430-7926 bp Ori: EJY33985.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6838-7294 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6838-7294 bp Feature: gene Location: 8104-8583 bp Ori: EJY33986.1 Feature: domain Description: DUF3841 Location: 8113-8488 bp Feature: domain Description: DUF384 1 Location: 8113-84 88 bp Feature: gene Location: 8750-8899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326), RVT-AbiP2, DUF3841 (pfam12952)

Seq: JH812994.1 Enterococcus faecium 513 genomic scaffold Scfld173, whole genome shotgun sequence (2761 bp)
Overview 1 RT 1: 131-2699 bp Neighborhood of RT #1 [131, 2699] RVT-GII HNHc Feature: gene Location: 131-2041 bp Ori: EJY31554.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1202 bp Feature: domain Description: HNHc Note: nucleases Location: 1757-1922 bp Feature: domain Description: HNHc Note: nucleases Location: 175 7-1922 bp Feature: gene Location: 2550-2699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)