myRT

myRT report for GCA_000295955.2_ASM29595v2

Download annotations/find similar RTs

Seq: ALXE01000019.1 Pantoea sp. A4 contig23, whole genome shotgun sequence (482855 bp)
Overview 1 RT 1: 306061-314099 bp Neighborhood of RT #1 [306061, 315166] AAA_15 RVT-Retrons Piwi_piwi-like_ProArk SIR2_2 Feature: gene Location: 306061-307134 bp Feature: gene Location: 308266-310353 bp Feature: domain Description: AAA_15 Location: 308305-309307 bp Feature: domain Description: AAA_1 5 Location: 308305-309307 bp Feature: gene Location: 310542-311597 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 310668-311226 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 0668-31 1 226 bp Feature: gene Location: 311850-313307 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 311958-313263 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 31 1 958-31 3263 bp Feature: gene Location: 313304-315166 bp Feature: domain Description: SIR2_2 Location: 313712-314099 bp Feature: domain Description: SIR2_2 Location: 31 371 2-31 4099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Piwi_piwi-like_ProArk (cd04659), SIR2_2 (pfam13289)

Seq: ALXE01000069.1 Pantoea sp. A4 contig73, whole genome shotgun sequence (52705 bp)
Overview 1 RT 1: 3-2171 bp Neighborhood of RT #1 [3, 2171] RVT-GII GIIM RVT-GII YkfC Feature: gene Location: 3-200 bp Feature: gene Location: 323-928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 329-428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 9-42 8 bp Feature: domain Description: GIIM Note: maturase Location: 485-707 bp Feature: domain Description: GIIM Note: maturase Location: 485-707 bp Feature: gene Location: 1034-1642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1103-1580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1103-1580 bp Feature: gene Location: 1673-1846 bp Feature: domain Description: YkfC Location: 1682-1841 bp Feature: domain Description: YkfC Location: 1682 -1841 bp Feature: gene Location: 1917-2171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YkfC (COG3344)