myRT

myRT report for GCA_000296795.1_ASM29679v1

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Seq: BAFH01000003.1 Candidatus Jettenia caeni DNA, contig: KSU1_C, whole genome shotgun sequence (1918969 bp)
Overview 1 RT 1: 159307-163618 bp 2 RT 2: 216974-222338 bp 3 RT 3: 640728-644968 bp 4 RT 4: 1592081-1595766 bp Neighborhood of RT #1 [159307, 163749] COG2442 DUF5615 RVT-CRISPR GIIM Cas1_I-II-III PIN_MT3492-like Phd Neighborhood of RT #2 [216974, 222385] DDE_Tnp_1 RVT-GII two_anch vWFA BNR BNR BNR Neighborhood of RT #3 [640728, 644979] degP_htrA_DO RVT-GII GIIM OmpR Neighborhood of RT #4 [1592081, 1595766] TPR_1 INT_Rci_Hp1_C RVT-GII COG4190 Feature: gene Location: 159307-159549 bp Ori: GAB61733.1 Feature: domain Description: COG2442 Location: 159313-159520 bp Feature: domain Description: COG2442 Location: 1 5931 3-1 59520 bp Feature: gene Location: 159555-159722 bp Ori: GAB61734.1 Feature: domain Description: DUF5615 Location: 159567-159720 bp Feature: domain Description: DUF561 5 Location: 1 59567-1 59720 bp Feature: gene Location: 160165-162480 bp Ori: GAB61735.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 160375-160999 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 60375-1 60999 bp Feature: domain Description: GIIM Note: maturase Location: 161050-161251 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 050-1 61 251 bp Feature: domain Description: Cas1_I-II-III Location: 161476-162442 bp Feature: domain Description: Cas1 _I-II-III Location: 1 61 476-1 62442 bp Feature: gene Location: 163046-163483 bp Ori: GAB61736.1 Feature: domain Description: PIN_MT3492-like Location: 163055-163457 bp Feature: domain Description: PIN_MT3492-like Location: 1 63055-1 63457 bp Feature: gene Location: 163480-163749 bp Ori: GAB61737.1 Feature: domain Description: Phd Location: 163483-163618 bp Feature: domain Description: Phd Location: 1 63483-1 6361 8 bp Feature: gene Location: 216974-218164 bp Ori: GAB61790.1 Feature: domain Description: DDE_Tnp_1 Location: 217454-217973 bp Feature: domain Description: DDE_Tnp_1 Location: 21 7454-21 7973 bp Feature: gene Location: 218295-218540 bp Feature: gene Location: 218608-218883 bp Ori: GAB61792.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 218623-218824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 8623-21 8824 bp Feature: gene Location: 219160-221292 bp Ori: GAB61793.1 Feature: domain Description: two_anch Location: 219169-219400 bp Feature: domain Description: two_anch Location: 21 91 69-21 9400 bp Feature: domain Description: vWFA Location: 219448-219775 bp Feature: domain Description: vWFA Location: 21 9448-21 9775 bp Feature: gene Location: 221483-222385 bp Ori: GAB61794.1 Feature: domain Description: BNR Location: 221909-221939 bp Feature: domain Description: BNR Location: 221 909-221 939 bp Feature: domain Description: BNR Location: 222029-222056 bp Feature: domain Description: BNR Location: 222029-222056 bp Feature: domain Description: BNR Location: 222308-222338 bp Feature: domain Description: BNR Location: 222308-222338 bp Feature: gene Location: 640728-640889 bp Feature: gene Location: 640886-641929 bp Ori: GAB62125.1 Feature: domain Description: degP_htrA_DO Location: 641084-641906 bp Feature: domain Description: degP_htrA_DO Location: 641 084-641 906 bp Feature: gene Location: 642970-644352 bp Ori: GAB62126.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643336-643975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643336-643975 bp Feature: domain Description: GIIM Note: maturase Location: 644047-644266 bp Feature: domain Description: GIIM Note: maturase Location: 644047-644266 bp Feature: gene Location: 644369-644557 bp Feature: gene Location: 644593-644979 bp Ori: GAB62128.1 Feature: domain Description: OmpR Location: 644614-644968 bp Feature: domain Description: OmpR Location: 64461 4-644968 bp Feature: gene Location: 1592081-1592248 bp Ori: GAB63008.1 Feature: domain Description: TPR_1 Location: 1592093-1592189 bp Feature: domain Description: TPR_1 Location: 1 592093-1 5921 89 bp Feature: gene Location: 1592828-1593523 bp Ori: GAB63009.1 Feature: domain Description: INT_Rci_Hp1_C Location: 1592900-1593425 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 1 592900-1 593425 bp Feature: gene Location: 1593595-1594368 bp Ori: GAB63010.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1593988-1594336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 593988-1 594336 bp Feature: gene Location: 1595067-1595441 bp Ori: GAB63011.1 Feature: domain Description: COG4190 Location: 1595079-1595436 bp Feature: domain Description: COG41 90 Location: 1 595079-1 595436 bp Feature: gene Location: 1595578-1595766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2442 (Uncharacterized conserved protein, DUF433 family ), DUF5615 (pfam18480), RVT-CRISPR, GIIM (pfam08388), Cas1_I-II-III (cl00656), PIN_MT3492-like (cd09874), Phd (COG4118), DDE_Tnp_1 (pfam01609), RVT-GII, two_anch (TIGR02226)
vWFA (cl00057), BNR (pfam02012), degP_htrA_DO (TIGR02037), OmpR (COG0745), TPR_1 (pfam00515), INT_Rci_Hp1_C (cd00796), COG4190 (Predicted transcriptional regulator )

Seq: BAFH01000004.1 Candidatus Jettenia caeni DNA, contig: KSU1_D, whole genome shotgun sequence (1212867 bp)
Overview 1 RT 1: 65460-69625 bp 2 RT 2: 281767-285490 bp 3 RT 3: 1141559-1149385 bp Neighborhood of RT #1 [65460, 70170] RVT-GII GIIM PRK11360 BaeS DDE_Tnp_1_5 Neighborhood of RT #2 [281767, 286083] RVT-GII GIIM rSAM_ocin_1 Neighborhood of RT #3 [1141559, 1149459] 2A0602 RND_mfp RVT-GII SPFH_HflC SPFH_HflK Feature: gene Location: 65460-65885 bp Feature: gene Location: 66430-66705 bp Feature: gene Location: 66656-67270 bp Ori: GAB63362.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66677-66893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66677-66893 bp Feature: domain Description: GIIM Note: maturase Location: 66965-67184 bp Feature: domain Description: GIIM Note: maturase Location: 66965-67184 bp Feature: gene Location: 67863-68960 bp Ori: GAB63363.1 Feature: domain Description: PRK11360 Location: 67944-68685 bp Feature: domain Description: PRK11360 Location: 67944-68685 bp Feature: domain Description: BaeS Location: 68832-68928 bp Feature: domain Description: BaeS Location: 68832 -6892 8 bp Feature: gene Location: 69166-70170 bp Ori: GAB63364.1 Feature: domain Description: DDE_Tnp_1_5 Location: 69301-69625 bp Feature: domain Description: DDE_Tnp_1_5 Location: 69301-6962 5 bp Feature: gene Location: 281767-282030 bp Feature: gene Location: 282128-282310 bp Feature: gene Location: 282327-282941 bp Ori: GAB63562.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282348-282564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 82 348-2 82 564 bp Feature: domain Description: GIIM Note: maturase Location: 282636-282855 bp Feature: domain Description: GIIM Note: maturase Location: 2 82 636-2 82 855 bp Feature: gene Location: 283419-283589 bp Feature: gene Location: 283915-286083 bp Ori: GAB63564.1 Feature: domain Description: rSAM_ocin_1 Location: 284650-285490 bp Feature: domain Description: rSAM_ocin_1 Location: 2 84650-2 85490 bp Feature: gene Location: 1141559-1144720 bp Ori: GAB64311.1 Feature: domain Description: 2A0602 Location: 1141562-1144694 bp Feature: domain Description: 2 A0602 Location: 1141562 -1144694 bp Feature: gene Location: 1144733-1145857 bp Ori: GAB64312.1 Feature: domain Description: RND_mfp Location: 1144844-1145783 bp Feature: domain Description: RND_mfp Location: 1144844-1145783 bp Feature: gene Location: 1146599-1146961 bp Ori: GAB64313.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1146620-1146836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114662 0-1146836 bp Feature: gene Location: 1147490-1148458 bp Ori: GAB64314.1 Feature: domain Description: SPFH_HflC Location: 1147556-1148375 bp Feature: domain Description: SPFH_HflC Location: 1147556-1148375 bp Feature: gene Location: 1148455-1149459 bp Ori: GAB64315.1 Feature: domain Description: SPFH_HflK Location: 1148548-1149385 bp Feature: domain Description: SPFH_HflK Location: 1148548-1149385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK11360 (two-component system sensor histidine kinase AtoS), BaeS (COG0642), DDE_Tnp_1_5 (pfam13737), rSAM_ocin_1 (TIGR03975), 2A0602 (TIGR00915), RND_mfp (TIGR01730), SPFH_HflC (cd03405), SPFH_HflK (cd03404)