myRT

myRT report for GCA_000297695.1_Bact_frag_HMW_610_V1

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Seq: JH815482.1 Bacteroides fragilis HMW 610 genomic scaffold supercont1.1, whole genome shotgun sequence (2437709 bp)
Overview 1 RT 1: 26129-31767 bp 2 RT 2: 1287579-1292726 bp Neighborhood of RT #1 [26129, 31772] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3875 Neighborhood of RT #2 [1287579, 1292726] SSB_OBF SSB_OBF DUF1738 RVT-GII Intron_maturas2 MPTase-PolyVal Feature: gene Location: 26129-26761 bp Feature: domain Description: DUF4141 Location: 26159-26300 bp Feature: domain Description: DUF41 41 Location: 261 59-26300 bp Feature: gene Location: 26962-27240 bp Feature: domain Description: Bac_Flav_CT_G Location: 26980-27238 bp Feature: domain Description: Bac_Flav_CT_G Location: 26980-27238 bp Feature: gene Location: 27318-29129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27582-28404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27582-28404 bp Feature: domain Description: Intron_maturas2 Location: 28479-28794 bp Feature: domain Description: Intron_maturas2 Location: 28479-28794 bp Feature: domain Description: HNHc Note: nucleases Location: 28950-29100 bp Feature: domain Description: HNHc Note: nucleases Location: 28950-291 00 bp Feature: gene Location: 29676-31505 bp Feature: domain Description: Bac_Flav_CT_G Location: 29679-31491 bp Feature: domain Description: Bac_Flav_CT_G Location: 29679-31 491 bp Feature: gene Location: 31602-31772 bp Feature: domain Description: DUF3875 Location: 31611-31767 bp Feature: domain Description: DUF3875 Location: 31 61 1 -31 767 bp Feature: gene Location: 1287579-1288190 bp Feature: domain Description: SSB_OBF Location: 1287597-1287807 bp Feature: domain Description: SSB_OBF Location: 1 287597-1 287807 bp Feature: domain Description: SSB_OBF Location: 1287903-1288068 bp Feature: domain Description: SSB_OBF Location: 1 287903-1 288068 bp Feature: gene Location: 1288196-1288699 bp Feature: domain Description: DUF1738 Location: 1288250-1288667 bp Feature: domain Description: DUF1 738 Location: 1 288250-1 288667 bp Feature: gene Location: 1289263-1291074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1289527-1290346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 289527-1 290346 bp Feature: domain Description: Intron_maturas2 Location: 1290490-1290730 bp Feature: domain Description: Intron_maturas2 Location: 1 290490-1 290730 bp Feature: gene Location: 1291088-1292395 bp Feature: domain Description: MPTase-PolyVal Location: 1291343-1291655 bp Feature: domain Description: MPTase-PolyVal Location: 1 291 343-1 291 655 bp Feature: gene Location: 1292436-1292726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3875 (pfam12991), SSB_OBF (cd04496), DUF1738 (pfam08401), MPTase-PolyVal (pfam18818)

Seq: JH815483.1 Bacteroides fragilis HMW 610 genomic scaffold supercont1.2, whole genome shotgun sequence (1705465 bp)
Overview 1 RT 1: 451377-457842 bp 2 RT 2: 961948-968459 bp 3 RT 3: 1629319-1633855 bp Neighborhood of RT #1 [451377, 458126] DUF2971 COG3943 RVT-GII Intron_maturas2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like GT_2_like_e Neighborhood of RT #2 [961948, 968459] RNase_Z rpsA RVT-Retrons Neighborhood of RT #3 [1629319, 1633855] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-CRISPR-like Feature: gene Location: 451377-452390 bp Feature: domain Description: DUF2971 Location: 451926-452181 bp Feature: domain Description: DUF2 971 Location: 45192 6-452 181 bp Feature: gene Location: 452498-452860 bp Feature: domain Description: COG3943 Location: 452537-452789 bp Feature: domain Description: COG3943 Location: 452 537-452 789 bp Feature: gene Location: 453075-454883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453339-454161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453339-454161 bp Feature: domain Description: Intron_maturas2 Location: 454272-454542 bp Feature: domain Description: Intron_maturas2 Location: 4542 72 -454542 bp Feature: gene Location: 455430-456599 bp Feature: domain Description: Arm-DNA-bind_5 Location: 455460-455715 bp Feature: domain Description: Arm-DNA-bind_5 Location: 455460-455715 bp Feature: domain Description: Phage_int_SAM_5 Location: 455754-456075 bp Feature: domain Description: Phage_int_SAM_5 Location: 455754-456075 bp Feature: domain Description: INTN1_C_like Location: 456114-456582 bp Feature: domain Description: INTN1_C_like Location: 456114-456582 bp Feature: gene Location: 456954-458126 bp Feature: domain Description: GT_2_like_e Location: 457128-457842 bp Feature: domain Description: GT_2 _like_e Location: 45712 8-457842 bp Feature: gene Location: 961948-962862 bp Feature: domain Description: RNase_Z Location: 961963-962854 bp Feature: domain Description: RNase_Z Location: 961963-962 854 bp Feature: gene Location: 962986-964779 bp Feature: domain Description: rpsA Location: 963064-964672 bp Feature: domain Description: rpsA Location: 963064-964672 bp Feature: gene Location: 964921-966036 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 965236-965788 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9652 36-965788 bp Feature: gene Location: 966079-966225 bp Feature: gene Location: 966240-968459 bp Feature: gene Location: 1629319-1629624 bp Feature: domain Description: TnpB_IS66 Location: 1629322-1629568 bp Feature: domain Description: TnpB_IS66 Location: 162 932 2 -162 9568 bp Feature: gene Location: 1629698-1631269 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1629821-1630049 bp Feature: domain Description: LZ_Tnp_IS66 Location: 162 982 1-1630049 bp Feature: domain Description: zf-IS66 Location: 1630088-1630169 bp Feature: domain Description: zf-IS66 Location: 1630088-1630169 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1630253-1631096 bp Feature: domain Description: DDE_Tnp_IS66 Location: 16302 53-1631096 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1631117-1631237 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1631117-16312 37 bp Feature: gene Location: 1631620-1632894 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1631827-1632469 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 163182 7-1632 469 bp Feature: gene Location: 1633137-1633394 bp Feature: gene Location: 1633517-1633855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2971 (pfam11185), COG3943 (Uncharacterized conserved protein ), RVT-GII, Intron_maturas2 (pfam01348), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), GT_2_like_e (cd04192), RNase_Z (TIGR02651), rpsA (TIGR00717)
RVT-Retrons, TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-CRISPR