myRT

myRT report for GCA_000297735.1_Bact_frag_HMW_615_V1

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Seq: JH815491.1 Bacteroides fragilis HMW 615 genomic scaffold supercont1.1, whole genome shotgun sequence (2054707 bp)
Overview 1 RT 1: 73021-76401 bp 2 RT 2: 212154-221119 bp Neighborhood of RT #1 [73021, 76493] COG3943 RVT-Retrons HTH_17 Neighborhood of RT #2 [212154, 221121] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 73021-73386 bp Ori: EKA87394.1 Feature: domain Description: COG3943 Location: 73060-73318 bp Feature: domain Description: COG3943 Location: 73060-7331 8 bp Feature: gene Location: 73652-74533 bp Feature: gene Location: 74564-75421 bp Ori: EKA87396.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74726-75251 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74726-75251 bp Feature: gene Location: 75447-75662 bp Feature: gene Location: 76128-76493 bp Ori: EKA87398.1 Feature: domain Description: HTH_17 Location: 76263-76401 bp Feature: domain Description: HTH_1 7 Location: 76263-76401 bp Feature: gene Location: 212154-213068 bp Ori: EKA87506.1 Feature: domain Description: RNase_Z Location: 212169-213060 bp Feature: domain Description: RNase_Z Location: 21 21 69-21 3060 bp Feature: gene Location: 213219-215012 bp Ori: EKA87507.1 Feature: domain Description: rpsA Location: 213297-214905 bp Feature: domain Description: rpsA Location: 21 3297-21 4905 bp Feature: gene Location: 215154-216266 bp Ori: EKA87508.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 215469-216018 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 5469-21 601 8 bp Feature: gene Location: 216473-218692 bp Feature: gene Location: 218932-221121 bp Ori: EKA87510.1 Feature: domain Description: GlnA3 Location: 219007-221119 bp Feature: domain Description: GlnA3 Location: 21 9007-221 1 1 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-Retrons, HTH_17 (pfam12728), RNase_Z (TIGR02651), rpsA (TIGR00717), GlnA3 (COG3968)

Seq: JH815496.1 Bacteroides fragilis HMW 615 genomic scaffold supercont1.6, whole genome shotgun sequence (31438 bp)
Overview 1 RT 1: 19553-23933 bp Neighborhood of RT #1 [19553, 23956] Avd_like RVT-DGRs YbdN Feature: gene Location: 19553-20035 bp Feature: gene Location: 20053-20424 bp Ori: EKA83147.1 Feature: domain Description: Avd_like Location: 20080-20383 bp Feature: domain Description: Avd_like Location: 2 0080-2 0383 bp Feature: gene Location: 21021-22259 bp Ori: EKA83148.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21102-21816 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 1102 -2 1816 bp Feature: gene Location: 22219-22674 bp Feature: gene Location: 22748-23956 bp Ori: EKA83150.1 Feature: domain Description: YbdN Location: 22772-23933 bp Feature: domain Description: YbdN Location: 2 2 772 -2 3933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, YbdN (COG3969)

Seq: JH815492.1 Bacteroides fragilis HMW 615 genomic scaffold supercont1.2, whole genome shotgun sequence (1560650 bp)
Overview 1 RT 1: 1113674-1119547 bp 2 RT 2: 1338308-1342123 bp Neighborhood of RT #1 [1113674, 1119558] Peptidase_A22B RVT_N RVT-GII GIIM TraG_VirD4 VirD4 TraX Neighborhood of RT #2 [1338308, 1342239] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 1113674-1114147 bp Feature: gene Location: 1114168-1114887 bp Ori: EKA85357.1 Feature: domain Description: Peptidase_A22B Location: 1114399-1114747 bp Feature: domain Description: Peptidase_A22B Location: 11143 99-1114747 bp Feature: gene Location: 1115508-1117163 bp Ori: EKA85358.1 Feature: domain Description: RVT_N Location: 1115562-1115805 bp Feature: domain Description: RVT_N Location: 1115562-1115805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1115850-1116495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1115850-1116495 bp Feature: domain Description: GIIM Note: maturase Location: 1116546-1116780 bp Feature: domain Description: GIIM Note: maturase Location: 1116546-1116780 bp Feature: gene Location: 1117160-1118863 bp Ori: EKA85359.1 Feature: domain Description: TraG_VirD4 Location: 1117385-1117745 bp Feature: domain Description: TraG_VirD4 Location: 11173 85-1117745 bp Feature: domain Description: VirD4 Location: 1117916-1118441 bp Feature: domain Description: VirD4 Location: 1117916-1118441 bp Feature: gene Location: 1118875-1119558 bp Ori: EKA85360.1 Feature: domain Description: TraX Location: 1118911-1119547 bp Feature: domain Description: TraX Location: 1118911-1119547 bp Feature: gene Location: 1338308-1338598 bp Ori: EKA84667.1 Feature: domain Description: Cas2_I_II_III Location: 1338335-1338545 bp Feature: domain Description: Cas2_I_II_III Location: 13 3 83 3 5-13 3 8545 bp Feature: gene Location: 1338592-1340862 bp Ori: EKA84668.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1338799-1339405 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 13 3 8799-13 3 9405 bp Feature: domain Description: Cas1_I-II-III Location: 1339864-1340821 bp Feature: domain Description: Cas1_I-II-III Location: 13 3 9864-13 40821 bp Feature: gene Location: 1340882-1341826 bp Ori: EKA84669.1 Feature: domain Description: Cmr6_III-B Location: 1341038-1341815 bp Feature: domain Description: Cmr6_III-B Location: 13 4103 8-13 41815 bp Feature: gene Location: 1341829-1342239 bp Ori: EKA84670.1 Feature: domain Description: Cas_Cmr5 Location: 1341877-1342123 bp Feature: domain Description: Cas_Cmr5 Location: 13 41877-13 42123 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_A22B (pfam04258), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG_VirD4, VirD4 (COG3505), TraX (pfam05857), Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656)
Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: JH815493.1 Bacteroides fragilis HMW 615 genomic scaffold supercont1.3, whole genome shotgun sequence (879703 bp)
Overview 1 RT 1: 156996-161306 bp 2 RT 2: 502762-508687 bp Neighborhood of RT #1 [156996, 161353] AhpC RVT_N RVT-GII GIIM DUF4890 Neighborhood of RT #2 [502762, 509376] RVT-GII Intron_maturas2 HNHc YWFCY TrwB_AAD_bind Relaxase Feature: gene Location: 156996-157562 bp Ori: EKA84559.1 Feature: domain Description: AhpC Location: 157005-157560 bp Feature: domain Description: AhpC Location: 157005-157560 bp Feature: gene Location: 157814-158281 bp Feature: gene Location: 158278-159933 bp Ori: EKA84561.1 Feature: domain Description: RVT_N Location: 158332-158575 bp Feature: domain Description: RVT_N Location: 158332-158575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158620-159265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158620-159265 bp Feature: domain Description: GIIM Note: maturase Location: 159316-159550 bp Feature: domain Description: GIIM Note: maturase Location: 159316-159550 bp Feature: gene Location: 160542-160673 bp Feature: gene Location: 160886-161353 bp Ori: EKA84563.1 Feature: domain Description: DUF4890 Location: 160946-161306 bp Feature: domain Description: DUF4 890 Location: 16094 6-161306 bp Feature: gene Location: 502762-503517 bp Feature: gene Location: 503570-504178 bp Feature: gene Location: 504165-506135 bp Ori: EKA84259.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504588-505410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504 588-5054 10 bp Feature: domain Description: Intron_maturas2 Location: 505572-505791 bp Feature: domain Description: Intron_maturas2 Location: 505572-505791 bp Feature: domain Description: HNHc Note: nucleases Location: 505956-506112 bp Feature: domain Description: HNHc Note: nucleases Location: 505956-506112 bp Feature: gene Location: 506560-508098 bp Ori: EKA84260.1 Feature: domain Description: YWFCY Location: 506569-506743 bp Feature: domain Description: YWFCY Location: 506569-50674 3 bp Feature: domain Description: TrwB_AAD_bind Location: 507895-508087 bp Feature: domain Description: TrwB_AAD_bind Location: 507895-508087 bp Feature: gene Location: 508129-509376 bp Ori: EKA84261.1 Feature: domain Description: Relaxase Location: 508156-508687 bp Feature: domain Description: Relaxase Location: 508156-508687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AhpC (TIGR03137), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4890 (pfam16231), Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293), TrwB_AAD_bind (pfam10412), Relaxase (pfam03432)