myRT

myRT report for GCA_000300115.1_Fremyella_diplosiphon-2.0.1

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Seq: JH930370.1 Tolypothrix sp. PCC 7601 strain UTEX B 481 genomic scaffold FDUTEX481_Contig13, whole genome shotgun sequence (248094 bp)
Overview 1 RT 1: 67948-72181 bp Neighborhood of RT #1 [67948, 72204] ParM_like RVT_N RVT-GII GIIM McrA ParG Feature: gene Location: 67948-68139 bp Feature: gene Location: 68215-69084 bp Feature: domain Description: ParM_like Location: 68224-69055 bp Feature: domain Description: ParM_like Location: 68224-69055 bp Feature: gene Location: 69106-70929 bp Feature: RT Description: RVT_N Location: 69142-69388 bp Feature: RT Description: RVT_N Location: 691 42-69388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69430-70123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69430-701 23 bp Feature: domain Description: GIIM Note: maturase Location: 70222-70456 bp Feature: domain Description: GIIM Note: maturase Location: 70222-70456 bp Feature: domain Description: McrA Location: 70546-70834 bp Feature: domain Description: McrA Location: 70546-70834 bp Feature: gene Location: 71509-71757 bp Feature: gene Location: 72010-72204 bp Feature: domain Description: ParG Location: 72082-72181 bp Feature: domain Description: ParG Location: 72082-721 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParM_like (cd10227), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), ParG (pfam09274)

Seq: JH930373.1 Tolypothrix sp. PCC 7601 strain UTEX B 481 genomic scaffold FDUTEX481_Contig16, whole genome shotgun sequence (187189 bp)
Overview 1 RT 1: 117353-121711 bp Neighborhood of RT #1 [117353, 121761] PdxJ RVT_N RVT-GII McrA SnoaL Ycf54 Feature: gene Location: 117353-118141 bp Feature: domain Description: PdxJ Location: 117428-118130 bp Feature: domain Description: PdxJ Location: 11742 8-118130 bp Feature: gene Location: 118385-118759 bp Feature: gene Location: 119345-120919 bp Feature: RT Description: RVT_N Location: 119381-119621 bp Feature: RT Description: RVT_N Location: 119381-11962 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119678-120332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119678-12 0332 bp Feature: domain Description: McrA Location: 120566-120896 bp Feature: domain Description: McrA Location: 12 0566-12 0896 bp Feature: gene Location: 120973-121368 bp Feature: domain Description: SnoaL Location: 121018-121264 bp Feature: domain Description: SnoaL Location: 12 1018-12 12 64 bp Feature: gene Location: 121432-121761 bp Feature: domain Description: Ycf54 Location: 121441-121711 bp Feature: domain Description: Ycf54 Location: 12 1441-12 1711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PdxJ (pfam03740), RVT_N (pfam13655), RVT-GII, McrA (COG4058), SnoaL (pfam07366), Ycf54 (pfam10674)

Seq: JH930357.1 Tolypothrix sp. PCC 7601 strain UTEX B 481 genomic scaffold FDUTEX481_Contig0, whole genome shotgun sequence (2130100 bp)
Overview 1 RT 1: 1182588-1187917 bp 2 RT 2: 1532558-1535751 bp Neighborhood of RT #1 [1182588, 1187943] YggE RVT_N RVT-GII GIIM HNHc PRK13927 Neighborhood of RT #2 [1532558, 1535795] arc_metj Doc RVT_N RVT-GII YkfC HNH Doc PEP_exosort Feature: gene Location: 1182588-1182713 bp Feature: gene Location: 1182948-1183697 bp Feature: domain Description: YggE Location: 1183008-1183695 bp Feature: domain Description: YggE Location: 1183 008-1183 695 bp Feature: gene Location: 1184164-1185855 bp Feature: RT Description: RVT_N Location: 1184197-1184443 bp Feature: RT Description: RVT_N Location: 1184197-1184443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1184485-1185151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1184485-1185151 bp Feature: domain Description: GIIM Note: maturase Location: 1185253-1185463 bp Feature: domain Description: GIIM Note: maturase Location: 1185253 -1185463 bp Feature: domain Description: HNHc Note: nucleases Location: 1185685-1185832 bp Feature: domain Description: HNHc Note: nucleases Location: 1185685-118583 2 bp Feature: gene Location: 1186032-1186184 bp Feature: gene Location: 1186936-1187943 bp Feature: domain Description: PRK13927 Location: 1186939-1187917 bp Feature: domain Description: PRK13 927 Location: 118693 9-1187917 bp Feature: gene Location: 1532558-1532755 bp Feature: domain Description: arc_metj Location: 1532561-1532684 bp Feature: domain Description: arc_metj Location: 153 2561-153 2684 bp Feature: gene Location: 1532755-1532988 bp Feature: domain Description: Doc Location: 1532761-1532971 bp Feature: domain Description: Doc Location: 153 2761-153 2971 bp Feature: gene Location: 1533559-1535313 bp Feature: RT Description: RVT_N Location: 1533595-1533838 bp Feature: RT Description: RVT_N Location: 153 3 595-153 3 83 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1533883-1534564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153 3 883 -153 4564 bp Feature: domain Description: YkfC Location: 1534693-1535002 bp Feature: domain Description: YkfC Location: 153 4693 -153 5002 bp Feature: domain Description: HNH Note: nucleases Location: 1535122-1535257 bp Feature: domain Description: HNH Note: nucleases Location: 153 5122-153 5257 bp Feature: gene Location: 1535313-1535612 bp Feature: domain Description: Doc Location: 1535427-1535589 bp Feature: domain Description: Doc Location: 153 5427-153 5589 bp Feature: gene Location: 1535637-1535795 bp Feature: domain Description: PEP_exosort Location: 1535682-1535751 bp Feature: domain Description: PEP_exosort Location: 153 5682-153 5751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YggE (COG2968), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13927 (rod shape-determining protein MreB; Provisional), arc_metj (LOAD_arc_metj), Doc (COG3654), YkfC (COG3344), HNH (pfam01844)
PEP_exosort (TIGR02595)

Seq: JH930359.1 Tolypothrix sp. PCC 7601 strain UTEX B 481 genomic scaffold FDUTEX481_Contig2, whole genome shotgun sequence (594120 bp)
Overview 1 RT 1: 560229-564597 bp Neighborhood of RT #1 [560229, 564617] DUF433 RVT-DGRs Avd_like COG4249 YfmG Feature: gene Location: 560229-560558 bp Feature: domain Description: DUF433 Location: 560289-560418 bp Feature: domain Description: DUF4 33 Location: 560289-5604 18 bp Feature: gene Location: 560860-561003 bp Feature: gene Location: 561055-562098 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 561262-562006 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 561262-562006 bp Feature: gene Location: 562233-562571 bp Feature: domain Description: Avd_like Location: 562251-562557 bp Feature: domain Description: Avd_like Location: 562251-562557 bp Feature: gene Location: 562674-564617 bp Feature: domain Description: COG4249 Location: 562677-563385 bp Feature: domain Description: COG4 24 9 Location: 562677-563385 bp Feature: domain Description: YfmG Location: 563838-564597 bp Feature: domain Description: YfmG Location: 563838-564 597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF433 (pfam04255), RVT-DGRs, Avd_like (cd16376), COG4249 (Uncharacterized protein, contains caspase domain ), YfmG (COG1262)