myRT

myRT report for GCA_000300675.1_Kleb_pneu_WGLW2_V1

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Seq: JH930419.1 Klebsiella pneumoniae subsp. pneumoniae WGLW2 genomic scaffold supercont1.1, whole genome shotgun sequence (5220966 bp)
Overview 1 RT 1: 1891184-1896706 bp 2 RT 2: 2140990-2147201 bp 3 RT 3: 3247249-3255640 bp 4 RT 4: 4254544-4263162 bp Neighborhood of RT #1 [1891184, 1896708] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #2 [2140990, 2147203] ImmA Acetyltransf_1 RVT-GII PRK10276 umuC Neighborhood of RT #3 [3247249, 3255642] YccC PRK10016 RVT-GII RVT-GII dacD SbcB Neighborhood of RT #4 [4254544, 4263179] YqgA PRK09692 RVT-UG4 FimD FimC Feature: gene Location: 1891184-1892323 bp Ori: EKB77920.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1891367-1892267 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 891 367-1 892267 bp Feature: gene Location: 1892494-1892736 bp Ori: EKB77921.1 Feature: domain Description: DinI Location: 1892545-1892725 bp Feature: domain Description: DinI Location: 1 892545-1 892725 bp Feature: gene Location: 1893455-1894942 bp Ori: EKB75558.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1893860-1894550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 893860-1 894550 bp Feature: gene Location: 1895021-1895440 bp Ori: EKB75559.1 Feature: domain Description: PRK10276 Location: 1895024-1895435 bp Feature: domain Description: PRK1 0276 Location: 1 895024-1 895435 bp Feature: gene Location: 1895443-1896708 bp Ori: EKB75560.1 Feature: domain Description: umuC Location: 1895446-1896706 bp Feature: domain Description: umuC Location: 1 895446-1 896706 bp Feature: gene Location: 2140990-2141466 bp Ori: EKB75796.1 Feature: domain Description: ImmA Location: 2141242-2141419 bp Feature: domain Description: ImmA Location: 21 41 242-21 41 41 9 bp Feature: gene Location: 2142077-2142520 bp Ori: EKB75797.1 Feature: domain Description: Acetyltransf_1 Location: 2142152-2142476 bp Feature: domain Description: Acetyltransf_1 Location: 21 421 52-21 42476 bp Feature: gene Location: 2143951-2145438 bp Ori: EKB75798.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2144356-2145046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 44356-21 45046 bp Feature: gene Location: 2145517-2145936 bp Ori: EKB75799.1 Feature: domain Description: PRK10276 Location: 2145520-2145931 bp Feature: domain Description: PRK1 0276 Location: 21 45520-21 45931 bp Feature: gene Location: 2145938-2147203 bp Ori: EKB75800.1 Feature: domain Description: umuC Location: 2145941-2147201 bp Feature: domain Description: umuC Location: 21 45941 -21 47201 bp Feature: gene Location: 3247249-3248307 bp Ori: EKB73710.1 Feature: domain Description: YccC Location: 3247255-3248293 bp Feature: domain Description: YccC Location: 3247255-3248293 bp Feature: gene Location: 3248406-3248879 bp Ori: EKB73711.1 Feature: domain Description: PRK10016 Location: 3248409-3248868 bp Feature: domain Description: PRK1 001 6 Location: 3248409-3248868 bp Feature: gene Location: 3248961-3250448 bp Ori: EKB73712.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3249366-3250056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3249366-3250056 bp Feature: gene Location: 3250870-3252357 bp Ori: EKB73713.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3251275-3251965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3251 275-3251 965 bp Feature: gene Location: 3252874-3254037 bp Ori: EKB73714.1 Feature: domain Description: dacD Location: 3252877-3254032 bp Feature: domain Description: dacD Location: 3252877-3254032 bp Feature: gene Location: 3254218-3255642 bp Ori: EKB73715.1 Feature: domain Description: SbcB Location: 3254224-3255640 bp Feature: domain Description: SbcB Location: 3254224-3255640 bp Feature: gene Location: 4254544-4255257 bp Ori: EKB72687.1 Feature: domain Description: YqgA Location: 4254550-4255252 bp Feature: domain Description: YqgA Location: 4254550-4255252 bp Feature: gene Location: 4256075-4256938 bp Ori: EKB72688.1 Feature: domain Description: PRK09692 Location: 4256099-4256936 bp Feature: domain Description: PRK09692 Location: 4256099-4256936 bp Feature: gene Location: 4257696-4259777 bp Ori: EKB72689.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4258107-4258551 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 42581 07-4258551 bp Feature: gene Location: 4259774-4262368 bp Ori: EKB72690.1 Feature: domain Description: FimD Location: 4259816-4262357 bp Feature: domain Description: FimD Location: 425981 6-4262357 bp Feature: gene Location: 4262415-4263179 bp Ori: EKB72691.1 Feature: domain Description: FimC Location: 4262460-4263162 bp Feature: domain Description: FimC Location: 4262460-42631 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), ImmA (COG2856), Acetyltransf_1 (pfam00583), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397)
SbcB (COG2925), YqgA (COG1811), PRK09692 (Integrase; provisional), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: JH930421.1 Klebsiella pneumoniae subsp. pneumoniae WGLW2 genomic scaffold supercont1.3, whole genome shotgun sequence (188422 bp)
Overview 1 RT 1: 69422-76855 bp 2 RT 2: 98412-103206 bp Neighborhood of RT #1 [69422, 77022] DDE_Tnp_IS1 BetT RVT-GII RVT-GII PRK09928 DUF2254 Neighborhood of RT #2 [98412, 103208] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 69422-69715 bp Ori: EKB70309.1 Feature: domain Description: DDE_Tnp_IS1 Location: 69425-69713 bp Feature: domain Description: DDE_Tnp_IS1 Location: 6942 5-69713 bp Feature: gene Location: 69867-71345 bp Ori: EKB70310.1 Feature: domain Description: BetT Location: 69897-71337 bp Feature: domain Description: BetT Location: 69897-71337 bp Feature: gene Location: 71394-72881 bp Ori: EKB70311.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71799-72489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71799-72 489 bp Feature: gene Location: 73303-74790 bp Ori: EKB70312.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73708-74398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73708-74398 bp Feature: gene Location: 75185-75682 bp Ori: EKB70313.1 Feature: domain Description: PRK09928 Location: 75206-75680 bp Feature: domain Description: PRK0992 8 Location: 752 06-75680 bp Feature: gene Location: 75745-77022 bp Ori: EKB70314.1 Feature: domain Description: DUF2254 Location: 75787-76855 bp Feature: domain Description: DUF2 2 54 Location: 75787-76855 bp Feature: gene Location: 98412-99461 bp Ori: EKB70203.1 Feature: domain Description: umuC Location: 98415-99411 bp Feature: domain Description: umuC Location: 98415-99411 bp Feature: gene Location: 99461-99886 bp Ori: EKB70204.1 Feature: domain Description: PRK10276 Location: 99464-99872 bp Feature: domain Description: PRK102 76 Location: 99464-99872 bp Feature: gene Location: 100366-101799 bp Ori: EKB70205.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100693-101407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100693-101407 bp Feature: gene Location: 102033-102263 bp Feature: gene Location: 102783-103208 bp Ori: EKB70207.1 Feature: domain Description: Antirestrict Location: 102918-103206 bp Feature: domain Description: Antirestrict Location: 102 918-1032 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), BetT (COG1292), RVT-GII, PRK09928 (choline transport protein BetT; Provisional), DUF2254 (pfam10011), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), Antirestrict (pfam03230)

Seq: JH930420.1 Klebsiella pneumoniae subsp. pneumoniae WGLW2 genomic scaffold supercont1.2, whole genome shotgun sequence (336608 bp)
Overview 1 RT 1: 28166-33083 bp 2 RT 2: 226289-230825 bp 3 RT 3: 306900-311094 bp Neighborhood of RT #1 [28166, 33616] PHA02517 COG3547 RVT-GII GIIM PHA02517 DDE_Tnp_1_5 Neighborhood of RT #2 [226289, 230869] InsE PHA02517 RVT-GII GIIM IS5 GntR Neighborhood of RT #3 [306900, 311192] RVT-GII NT_2-5OAS_ClassI-CCAase PRK13300 Feature: gene Location: 28166-28372 bp Ori: EKB70815.1 Feature: domain Description: PHA02517 Location: 28169-28361 bp Feature: domain Description: PHA02517 Location: 28169-283 61 bp Feature: gene Location: 28491-29567 bp Ori: EKB70816.1 Feature: domain Description: COG3547 Location: 28530-29451 bp Feature: domain Description: COG3 547 Location: 2853 0-29451 bp Feature: gene Location: 30109-31632 bp Ori: EKB70817.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30382-31114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 03 82-3 1114 bp Feature: domain Description: GIIM Note: maturase Location: 31189-31387 bp Feature: domain Description: GIIM Note: maturase Location: 3 1189-3 13 87 bp Feature: gene Location: 32224-32463 bp Ori: EKB70818.1 Feature: domain Description: PHA02517 Location: 32227-32398 bp Feature: domain Description: PHA02517 Location: 3 2227-3 23 98 bp Feature: gene Location: 32693-33616 bp Ori: EKB70819.1 Feature: domain Description: DDE_Tnp_1_5 Location: 32750-33083 bp Feature: domain Description: DDE_Tnp_1_5 Location: 3 2750-3 3 083 bp Feature: gene Location: 226289-226594 bp Ori: EKB70538.1 Feature: domain Description: InsE Location: 226298-226568 bp Feature: domain Description: InsE Location: 226298-226568 bp Feature: gene Location: 226720-226992 bp Ori: EKB70539.1 Feature: domain Description: PHA02517 Location: 226726-226975 bp Feature: domain Description: PHA02517 Location: 226726-226975 bp Feature: gene Location: 227635-229155 bp Ori: EKB70540.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227908-228637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227908-22863 7 bp Feature: domain Description: GIIM Note: maturase Location: 228709-228910 bp Feature: domain Description: GIIM Note: maturase Location: 228709-228910 bp Feature: gene Location: 229773-230042 bp Ori: EKB70541.1 Feature: domain Description: IS5 Location: 229785-230037 bp Feature: domain Description: IS5 Location: 229785-23 003 7 bp Feature: gene Location: 230207-230869 bp Ori: EKB70542.1 Feature: domain Description: GntR Location: 230213-230825 bp Feature: domain Description: GntR Location: 23 0213 -23 0825 bp Feature: gene Location: 306900-307409 bp Feature: gene Location: 307418-307615 bp Feature: gene Location: 307845-309332 bp Ori: EKB70398.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 308250-308940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 08250-3 08940 bp Feature: gene Location: 309825-310076 bp Feature: gene Location: 310242-311192 bp Ori: EKB70400.1 Feature: domain Description: NT_2-5OAS_ClassI-CCAase Location: 310311-310749 bp Feature: domain Description: NT_2-5OAS_ClassI-CCAase Location: 3 103 11-3 10749 bp Feature: domain Description: PRK13300 Location: 310776-311094 bp Feature: domain Description: PRK13 3 00 Location: 3 10776-3 11094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_5 (pfam13737), InsE (COG2963), IS5 (COG3039), GntR (pfam00392), NT_2-5OAS_ClassI-CCAase (cd05400), PRK13300 (CCA tRNA nucleotidyltransferase)