myRT

myRT report for GCA_000302595.1_ASM30259v1

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Seq: JH947126.1 Pedobacter arcticus A12 genomic scaffold Scaffold2, whole genome shotgun sequence (1024955 bp)
Overview 1 RT 1: 399474-402411 bp Neighborhood of RT #1 [399474, 402411] DUF4406 RVT-DGRs Feature: gene Location: 399474-399833 bp Feature: domain Description: DUF4406 Location: 399561-399825 bp Feature: domain Description: DUF4406 Location: 399561 -399825 bp Feature: gene Location: 400097-400387 bp Feature: gene Location: 400374-401333 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 400584-401172 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 400584-401 1 72 bp Feature: gene Location: 401555-401950 bp Feature: gene Location: 401953-402411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4406 (pfam14359), RVT-DGRs

Seq: JH947127.1 Pedobacter arcticus A12 genomic scaffold Scaffold3, whole genome shotgun sequence (994442 bp)
Overview 1 RT 1: 348451-359791 bp Neighborhood of RT #1 [348451, 359835] VOC_like RVT-GII GIIM RVT-GII GIIM Gp49 HTH_XRE RVT-GII GIIM HTH_XRE Feature: gene Location: 348451-348861 bp Feature: domain Description: VOC_like Location: 348463-348817 bp Feature: domain Description: VOC_like Location: 348463-348817 bp Feature: gene Location: 349041-349910 bp Feature: gene Location: 350322-351779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350658-351276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350658-3512 76 bp Feature: domain Description: GIIM Note: maturase Location: 351345-351561 bp Feature: domain Description: GIIM Note: maturase Location: 351345-351561 bp Feature: gene Location: 351907-352275 bp Feature: gene Location: 352297-352926 bp Feature: gene Location: 353097-354047 bp Feature: gene Location: 354174-355427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354387-355047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354387-355047 bp Feature: domain Description: GIIM Note: maturase Location: 355140-355335 bp Feature: domain Description: GIIM Note: maturase Location: 355140-355335 bp Feature: gene Location: 356571-356726 bp Feature: gene Location: 356784-357140 bp Feature: domain Description: Gp49 Location: 356829-357090 bp Feature: domain Description: Gp49 Location: 35682 9-357090 bp Feature: gene Location: 357137-357451 bp Feature: domain Description: HTH_XRE Location: 357242-357395 bp Feature: domain Description: HTH_XRE Location: 3572 42 -357395 bp Feature: gene Location: 357571-358824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357784-358444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357784-358444 bp Feature: domain Description: GIIM Note: maturase Location: 358537-358732 bp Feature: domain Description: GIIM Note: maturase Location: 358537-358732 bp Feature: gene Location: 359277-359720 bp Feature: gene Location: 359683-359835 bp Feature: domain Description: HTH_XRE Location: 359686-359791 bp Feature: domain Description: HTH_XRE Location: 359686-359791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VOC_like (cd16355), RVT-GII, GIIM (pfam08388), Gp49 (pfam05973), HTH_XRE (smart00530)

Seq: JH947128.1 Pedobacter arcticus A12 genomic scaffold Scaffold4, whole genome shotgun sequence (640542 bp)
Overview 1 RT 1: 91064-98213 bp Neighborhood of RT #1 [91064, 98722] RVT-UG5 nitrilase HATPase_c_3 DUF4365 Feature: gene Location: 91064-91615 bp Feature: gene Location: 91836-92195 bp Feature: gene Location: 92377-95700 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 92932-93472 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 9293 2-93 472 bp Feature: domain Description: nitrilase Location: 94945-95605 bp Feature: domain Description: nitrilase Location: 94945-95605 bp Feature: gene Location: 95747-97810 bp Feature: domain Description: HATPase_c_3 Location: 95840-96224 bp Feature: domain Description: HATPase_c_3 Location: 95840-96224 bp Feature: gene Location: 97844-98722 bp Feature: domain Description: DUF4365 Location: 97883-98213 bp Feature: domain Description: DUF43 65 Location: 97883 -98213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), HATPase_c_3 (pfam13589), DUF4365 (pfam14280)

Seq: AKZJ01000014.1 Pedobacter arcticus A12 Scaffold5_1, whole genome shotgun sequence (191503 bp)
Overview 1 RT 1: 2-977 bp Neighborhood of RT #1 [2, 977] RVT-GII Feature: gene Location: 2-340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197-341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197-34 1 bp Feature: gene Location: 387-566 bp Feature: gene Location: 639-977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AKZJ01000021.1 Pedobacter arcticus A12 Scaffold11_1, whole genome shotgun sequence (1471 bp)
Overview 1 RT 1: 24-1185 bp Neighborhood of RT #1 [24, 1277] RVT-GII GIIM Feature: gene Location: 24-1277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237-897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237-897 bp Feature: domain Description: GIIM Note: maturase Location: 990-1185 bp Feature: domain Description: GIIM Note: maturase Location: 990-1185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)