myRT

myRT report for GCA_000302915.1_Pav631_1.0

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Seq: JH951502.1 Pseudomonas avellanae BPIC 631 genomic scaffold Pav631_scaffold057, whole genome shotgun sequence (86408 bp)
Overview 1 RT 1: 70831-82477 bp Neighborhood of RT #1 [70831, 82546] PiuB TauD RVT-GII GIIM PRK12316 PRK12316 PRK12467 Feature: gene Location: 70831-72045 bp Ori: EKG32424.1 Feature: domain Description: PiuB Location: 70846-71983 bp Feature: domain Description: PiuB Location: 70846-71 983 bp Feature: gene Location: 72359-73336 bp Ori: EKG32425.1 Feature: domain Description: TauD Location: 72446-73310 bp Feature: domain Description: TauD Location: 72446-7331 0 bp Feature: gene Location: 74399-75634 bp Ori: EKG32422.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74591-75206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74591 -75206 bp Feature: domain Description: GIIM Note: maturase Location: 75251-75461 bp Feature: domain Description: GIIM Note: maturase Location: 75251 -75461 bp Feature: gene Location: 76607-80017 bp Ori: EKG32420.1 Feature: domain Description: PRK12316 Location: 76610-78218 bp Feature: domain Description: PRK1 231 6 Location: 7661 0-7821 8 bp Feature: domain Description: PRK12316 Location: 78242-80006 bp Feature: domain Description: PRK1 231 6 Location: 78242-80006 bp Feature: gene Location: 80014-82546 bp Ori: EKG32421.1 Feature: domain Description: PRK12467 Location: 80017-82477 bp Feature: domain Description: PRK1 2467 Location: 8001 7-82477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PiuB (COG3182), TauD (pfam02668), RVT-GII, GIIM (pfam08388), PRK12316 (peptide synthase; Provisional), PRK12467 (peptide synthase; Provisional)

Seq: JH951542.1 Pseudomonas avellanae BPIC 631 genomic scaffold Pav631_scaffold097, whole genome shotgun sequence (172441 bp)
Overview 1 RT 1: 141789-151189 bp Neighborhood of RT #1 [141789, 151189] FimA RVT-GII GIIM autotrans_barl Feature: gene Location: 141789-142910 bp Ori: EKG31574.1 Feature: domain Description: FimA Location: 142422-142908 bp Feature: domain Description: FimA Location: 142 42 2 -142 908 bp Feature: gene Location: 142948-144453 bp Feature: gene Location: 144653-145978 bp Ori: EKG31576.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144914-145529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144914-14552 9 bp Feature: domain Description: GIIM Note: maturase Location: 145586-145811 bp Feature: domain Description: GIIM Note: maturase Location: 145586-145811 bp Feature: gene Location: 146550-148874 bp Ori: EKG31577.1 Feature: domain Description: autotrans_barl Location: 147657-148872 bp Feature: domain Description: autotrans_barl Location: 147657-148872 bp Feature: gene Location: 149192-151189 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimA (pfam16970), RVT-GII, GIIM (pfam08388), autotrans_barl (TIGR01414)

Seq: JH951607.1 Pseudomonas avellanae BPIC 631 genomic scaffold Pav631_scaffold162, whole genome shotgun sequence (68223 bp)
Overview 1 RT 1: 50726-52633 bp 2 RT 2: 55238-56120 bp Neighborhood of RT #1 [50726, 53076] Acetyltransf_1 RVT-G2L4 Neighborhood of RT #2 [55238, 56674] RVT-UG17 Feature: gene Location: 50726-51172 bp Ori: EKG29922.1 Feature: domain Description: Acetyltransf_1 Location: 50858-51119 bp Feature: domain Description: Acetyltransf_1 Location: 50858-51119 bp Feature: gene Location: 51829-53076 bp Ori: EKG29923.1 Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 52042-52633 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 52042-5263 3 bp Feature: gene Location: 55238-56674 bp Ori: EKG29912.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 55508-56120 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 55508-56120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_1 (pfam00583), RVT-G2L4, RVT-UG17