myRT

myRT report for GCA_000303635.2_ASM30363v2

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Seq: JH965386.1 Escherichia coli N1 genomic scaffold N1.contig.139, whole genome shotgun sequence (31721 bp)
Overview 1 RT 1: 16688-25869 bp Neighborhood of RT #1 [16688, 25955] Arm-DNA-bind_3 INT_P4_C RVT-UG1 RT_Bac_retron_II HsdM RMtype1_S_StySKI-TRD2-CR2_like RMtype1_S_StySKI-TRD2-CR2_like Feature: gene Location: 16688-17995 bp Ori: EKI51029.1 Feature: domain Description: Arm-DNA-bind_3 Location: 16703-16970 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 6703-1 6970 bp Feature: domain Description: INT_P4_C Location: 17387-17936 bp Feature: domain Description: INT_P4_C Location: 1 7387-1 7936 bp Feature: gene Location: 18000-18185 bp Feature: gene Location: 18289-22065 bp Ori: EKI51031.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 18907-19414 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1 8907-1 941 4 bp Feature: domain Description: RT_Bac_retron_II Location: 21208-21376 bp Feature: domain Description: RT_Bac_retron_II Location: 21 208-21 376 bp Feature: gene Location: 22318-24633 bp Ori: EKI51032.1 Feature: domain Description: HsdM Location: 22321-23701 bp Feature: domain Description: HsdM Location: 22321 -23701 bp Feature: gene Location: 24633-25955 bp Ori: EKI51033.1 Gene: hsdS Feature: domain Description: RMtype1_S_StySKI-TRD2-CR2_like Location: 24999-25254 bp Feature: domain Description: RMtype1 _S_StySKI-TRD2-CR2_like Location: 24999-25254 bp Feature: domain Description: RMtype1_S_StySKI-TRD2-CR2_like Location: 25290-25869 bp Feature: domain Description: RMtype1 _S_StySKI-TRD2-CR2_like Location: 25290-25869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), RVT-UG1, RT_Bac_retron_II (cd03487), HsdM (COG0286), RMtype1_S_StySKI-TRD2-CR2_like (cd17259)

Seq: JH965517.1 Escherichia coli N1 genomic scaffold N1.contig.291, whole genome shotgun sequence (22185 bp)
Overview 1 RT 1: 3166-10387 bp Neighborhood of RT #1 [3166, 10836] conj_TOL_TraD DUF4400 RVT-GII GIIM GrsT Beta-lactamase Feature: gene Location: 3166-3732 bp Feature: gene Location: 3729-5825 bp Ori: EKI45129.1 Feature: domain Description: conj_TOL_TraD Location: 3750-5685 bp Feature: domain Description: conj_TOL_TraD Location: 3750-5685 bp Feature: gene Location: 5818-6987 bp Ori: EKI45125.1 Feature: domain Description: DUF4400 Location: 5986-6430 bp Feature: domain Description: DUF4400 Location: 5986-6430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6430-6610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6430-6610 bp Feature: domain Description: GIIM Note: maturase Location: 6688-6910 bp Feature: domain Description: GIIM Note: maturase Location: 6688-6910 bp Feature: gene Location: 8616-9338 bp Ori: EKI45135.1 Feature: domain Description: GrsT Location: 8625-9318 bp Feature: domain Description: GrsT Location: 862 5-9318 bp Feature: gene Location: 9331-10836 bp Ori: EKI45128.1 Feature: domain Description: Beta-lactamase Location: 9457-10387 bp Feature: domain Description: Beta-lactamase Location: 9457-10387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_TOL_TraD (TIGR03754), DUF4400 (pfam14348), RVT-GII, GIIM (pfam08388), GrsT (COG3208), Beta-lactamase (pfam00144)

Seq: JH965477.1 Escherichia coli N1 genomic scaffold N1.contig.241, whole genome shotgun sequence (3683 bp)
Overview 1 RT 1: 495-3594 bp Neighborhood of RT #1 [495, 3674] RVT-GII GIIM RVT-GII CdiI_3 PT-VENN Ntox28 Feature: gene Location: 495-1265 bp Ori: EKI46254.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498-912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498-912 bp Feature: domain Description: GIIM Note: maturase Location: 963-1128 bp Feature: domain Description: GIIM Note: maturase Location: 963 -1128 bp Feature: gene Location: 1304-1786 bp Ori: EKI46253.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1625-1712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1625-1712 bp Feature: gene Location: 2233-2619 bp Ori: EKI46252.1 Feature: domain Description: CdiI_3 Location: 2257-2533 bp Feature: domain Description: CdiI_3 Location: 2257-253 3 bp Feature: gene Location: 2616-3674 bp Ori: EKI46251.1 Feature: domain Description: PT-VENN Location: 2865-3012 bp Feature: domain Description: PT-VENN Location: 2865-3 012 bp Feature: domain Description: Ntox28 Location: 3387-3594 bp Feature: domain Description: Ntox28 Location: 3 3 87-3 594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CdiI_3 (pfam18616), PT-VENN (pfam04829), Ntox28 (pfam15605)