myRT

myRT report for GCA_000303755.2_ASM30375v2

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Seq: JH961865.1 Escherichia coli FDA504 genomic scaffold FDA504.contig.9, whole genome shotgun sequence (12413 bp)
Overview 1 RT 1: 921-7160 bp Neighborhood of RT #1 [921, 7160] PRK13705 PRK13698 RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 921-2078 bp Feature: domain Description: PRK13705 Location: 924-2076 bp Feature: domain Description: PRK1 3705 Location: 924-2076 bp Feature: gene Location: 2078-3049 bp Feature: domain Description: PRK13698 Location: 2081-3044 bp Feature: domain Description: PRK1 3698 Location: 2081 -3044 bp Feature: gene Location: 4349-6073 bp Feature: RT Description: RVT_N Location: 4406-4643 bp Feature: RT Description: RVT_N Location: 4406-4643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4694-5342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4694-5342 bp Feature: domain Description: YkfC Location: 5474-5630 bp Feature: domain Description: YkfC Location: 5474-5630 bp Feature: domain Description: HNHc Note: nucleases Location: 5858-6017 bp Feature: domain Description: HNHc Note: nucleases Location: 5858-601 7 bp Feature: gene Location: 6150-7052 bp Feature: domain Description: DUF1281 Location: 6219-6747 bp Feature: domain Description: DUF1 281 Location: 621 9-6747 bp Feature: domain Description: DUF1281_C Location: 6753-6981 bp Feature: domain Description: DUF1 281 _C Location: 6753-6981 bp Feature: gene Location: 7049-7160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13698 (ParB/RepB/Spo0J family plasmid partition protein), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406), PRK13705 (plasmid-partitioning protein SopA; Provisional)

Seq: JH962170.1 Escherichia coli FDA504 genomic scaffold FDA504.contig.356, whole genome shotgun sequence (103184 bp)
Overview 1 RT 1: 41306-45284 bp Neighborhood of RT #1 [41306, 46186] RVT-Retrons Phage_GPA Feature: gene Location: 41306-41437 bp Feature: gene Location: 41499-41936 bp Feature: gene Location: 42061-43011 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42241-42784 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42 2 41-42 784 bp Feature: gene Location: 43334-43489 bp Feature: gene Location: 43898-46186 bp Feature: domain Description: Phage_GPA Location: 44297-45284 bp Feature: domain Description: Phage_GPA Location: 442 97-452 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Phage_GPA (pfam05840)