myRT

myRT report for GCA_000304095.2_ASM30409v2

Download annotations/find similar RTs

Seq: JH954362.1 Escherichia coli ARS4.2123 genomic scaffold ARS42123.contig.199, whole genome shotgun sequence (14938 bp)
Overview 1 RT 1: 11287-14291 bp Neighborhood of RT #1 [11287, 14524] TIGR02646 COG3950 RVT-Retrons Feature: gene Location: 11287-11937 bp Ori: EKI20689.1 Feature: domain Description: TIGR02646 Location: 11353-11752 bp Feature: domain Description: TIGR02646 Location: 1 1 353-1 1 752 bp Feature: gene Location: 11940-13592 bp Ori: EKI20690.1 Feature: domain Description: COG3950 Location: 12138-13557 bp Feature: domain Description: COG3950 Location: 1 21 38-1 3557 bp Feature: gene Location: 13589-14524 bp Ori: EKI20691.1 Gene: ret Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13691-14291 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 3691 -1 4291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons

Seq: JH954349.1 Escherichia coli ARS4.2123 genomic scaffold ARS42123.contig.183, whole genome shotgun sequence (3838 bp)
Overview 1 RT 1: 139-3484 bp Neighborhood of RT #1 [139, 3838] TraD PRK13889 RVT-UG16 Feature: gene Location: 139-444 bp Ori: EKI21109.1 Feature: domain Description: TraD Location: 247-421 bp Feature: domain Description: TraD Location: 2 47-42 1 bp Feature: gene Location: 1084-2580 bp Ori: EKI21110.1 Feature: domain Description: PRK13889 Location: 1087-1690 bp Feature: domain Description: PRK13889 Location: 1087-1690 bp Feature: gene Location: 2713-3838 bp Ori: EKI21111.1 Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 3076-3484 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 3076-3484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraD (pfam06412), PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-UG16

Seq: JH954217.1 Escherichia coli ARS4.2123 genomic scaffold ARS42123.contig.35, whole genome shotgun sequence (94761 bp)
Overview 1 RT 1: 42346-48332 bp Neighborhood of RT #1 [42346, 48337] DinI RVT-Retrons Q P Feature: gene Location: 42346-42579 bp Ori: EKI30922.1 Feature: domain Description: DinI Location: 42388-42574 bp Feature: domain Description: DinI Location: 423 88-42574 bp Feature: gene Location: 43370-43531 bp Feature: gene Location: 43744-45504 bp Ori: EKI30903.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43888-44512 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43 888-44512 bp Feature: gene Location: 45546-46571 bp Ori: EKI30938.1 Feature: domain Description: Q Location: 45549-46566 bp Feature: domain Description: Q Location: 45549-46566 bp Feature: gene Location: 46571-48337 bp Ori: EKI30947.1 Feature: domain Description: P Location: 46598-48332 bp Feature: domain Description: P Location: 46598-483 3 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-Retrons, Q (PHA02536), P (PHA02535)