myRT

myRT report for GCA_000304195.1_Bact_thet_CL09T03C10_V1

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Seq: JH951901.1 Bacteroides finegoldii CL09T03C10 genomic scaffold supercont1.1, whole genome shotgun sequence (2071287 bp)
Overview 1 RT 1: 390652-394981 bp 2 RT 2: 924581-936272 bp 3 RT 3: 987275-990514 bp 4 RT 4: 1401096-1412479 bp 5 RT 5: 1887090-1891497 bp 6 RT 6: 1941608-1946790 bp Neighborhood of RT #1 [390652, 394981] HTH_23 RVT-DGRs Neighborhood of RT #2 [924581, 936272] CotH LRR_AMN1 RVT-DGRs Neighborhood of RT #3 [987275, 990514] HU-HIG RVT-GII Intron_maturas2 HNHc Neighborhood of RT #4 [1401096, 1412479] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Neighborhood of RT #5 [1887090, 1891497] Dam TraG-D_C RVT-GII Intron_maturas2 HNHc Neighborhood of RT #6 [1941608, 1947251] DUF3875 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 390652-391032 bp Feature: gene Location: 392226-392442 bp Feature: domain Description: HTH_23 Location: 392232-392361 bp Feature: domain Description: HTH_23 Location: 392232-392361 bp Feature: gene Location: 392770-394071 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 392980-393658 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 392980-393658 bp Feature: gene Location: 394068-394553 bp Feature: gene Location: 394739-394981 bp Feature: gene Location: 924581-925897 bp Feature: gene Location: 925920-933485 bp Feature: domain Description: CotH Location: 929757-930648 bp Feature: domain Description: CotH Location: 929757-930648 bp Feature: domain Description: LRR_AMN1 Location: 931278-931701 bp Feature: domain Description: LRR_AMN1 Location: 931 278-931 701 bp Feature: gene Location: 934038-935291 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 934200-934878 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 934200-934878 bp Feature: gene Location: 935291-935773 bp Feature: gene Location: 935982-936272 bp Feature: gene Location: 987275-987700 bp Feature: domain Description: HU-HIG Location: 987359-987638 bp Feature: domain Description: HU-HIG Location: 987359-987638 bp Feature: gene Location: 987748-988221 bp Feature: gene Location: 988255-990060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 988519-989341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98851 9-989341 bp Feature: domain Description: Intron_maturas2 Location: 989419-989749 bp Feature: domain Description: Intron_maturas2 Location: 98941 9-989749 bp Feature: domain Description: HNHc Note: nucleases Location: 989893-990037 bp Feature: domain Description: HNHc Note: nucleases Location: 989893-990037 bp Feature: gene Location: 990094-990297 bp Feature: gene Location: 990413-990514 bp Feature: gene Location: 1401096-1402241 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1401120-1401366 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 401 1 20-1 401 366 bp Feature: domain Description: Phage_int_SAM_5 Location: 1401405-1401690 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 401 405-1 401 690 bp Feature: domain Description: INTN1_C_like Location: 1401729-1402203 bp Feature: domain Description: INTN1 _C_like Location: 1 401 729-1 402203 bp Feature: gene Location: 1402290-1402784 bp Feature: gene Location: 1402786-1404081 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1402996-1403674 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 402996-1 403674 bp Feature: gene Location: 1404515-1411303 bp Feature: domain Description: Laminin_G_3 Location: 1406951-1407332 bp Feature: domain Description: Laminin_G_3 Location: 1 406951 -1 407332 bp Feature: domain Description: pfam08757 Location: 1408127-1408451 bp Feature: domain Description: pfam08757 Location: 1 4081 27-1 408451 bp Feature: domain Description: LRR_AMN1 Location: 1409057-1409528 bp Feature: domain Description: LRR_AMN1 Location: 1 409057-1 409528 bp Feature: gene Location: 1411313-1412479 bp Feature: gene Location: 1887090-1887260 bp Feature: domain Description: Dam Location: 1887132-1887258 bp Feature: domain Description: Dam Location: 1 8871 32-1 887258 bp Feature: gene Location: 1887299-1888456 bp Feature: domain Description: TraG-D_C Location: 1887824-1888157 bp Feature: domain Description: TraG-D_C Location: 1 887824-1 8881 57 bp Feature: gene Location: 1888443-1890248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1888707-1889529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 888707-1 889529 bp Feature: domain Description: Intron_maturas2 Location: 1889607-1889937 bp Feature: domain Description: Intron_maturas2 Location: 1 889607-1 889937 bp Feature: domain Description: HNHc Note: nucleases Location: 1890081-1890225 bp Feature: domain Description: HNHc Note: nucleases Location: 1 890081 -1 890225 bp Feature: gene Location: 1890282-1890755 bp Feature: gene Location: 1890793-1891497 bp Feature: gene Location: 1941608-1941778 bp Feature: domain Description: DUF3875 Location: 1941617-1941773 bp Feature: domain Description: DUF3875 Location: 1 941 61 7-1 941 773 bp Feature: gene Location: 1941875-1943704 bp Feature: domain Description: Bac_Flav_CT_G Location: 1941878-1943690 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 941 878-1 943690 bp Feature: gene Location: 1944251-1946062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1944515-1945337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 94451 5-1 945337 bp Feature: domain Description: Intron_maturas2 Location: 1945412-1945727 bp Feature: domain Description: Intron_maturas2 Location: 1 94541 2-1 945727 bp Feature: domain Description: HNHc Note: nucleases Location: 1945883-1946033 bp Feature: domain Description: HNHc Note: nucleases Location: 1 945883-1 946033 bp Feature: gene Location: 1946140-1946418 bp Feature: domain Description: Bac_Flav_CT_G Location: 1946158-1946416 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 9461 58-1 94641 6 bp Feature: gene Location: 1946619-1947251 bp Feature: domain Description: DUF4141 Location: 1946637-1946790 bp Feature: domain Description: DUF41 41 Location: 1 946637-1 946790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), RVT-DGRs, CotH (pfam08757), LRR_AMN1 (sd00034), HU-HIG (pfam18291), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102)
INTN1_C_like (cd01185), Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), Dam (pfam05869), TraG-D_C (pfam12696), DUF3875 (pfam12991), Bac_Flav_CT_G (TIGR03783), DUF4141 (pfam13605)

Seq: JH951903.1 Bacteroides finegoldii CL09T03C10 genomic scaffold supercont1.3, whole genome shotgun sequence (1100651 bp)
Overview 1 RT 1: 338839-348349 bp 2 RT 2: 906343-910136 bp Neighborhood of RT #1 [338839, 348354] FN3 FN3 FN3 DUF4957 DUF5123 SusD_RagB RVT_N RVT-GII GIIM SusD OMP_RagA_SusC Neighborhood of RT #2 [906343, 910207] DUF1566 Avd_like RVT-DGRs PQQ_ABC_repeats Feature: gene Location: 338839-340674 bp Feature: domain Description: FN3 Location: 338992-339226 bp Feature: domain Description: FN3 Location: 338992 -3392 2 6 bp Feature: domain Description: FN3 Location: 339286-339466 bp Feature: domain Description: FN3 Location: 3392 86-339466 bp Feature: domain Description: FN3 Location: 339529-339745 bp Feature: domain Description: FN3 Location: 33952 9-339745 bp Feature: domain Description: DUF4957 Location: 339973-340318 bp Feature: domain Description: DUF4957 Location: 339973-340318 bp Feature: domain Description: DUF5123 Location: 340366-340666 bp Feature: domain Description: DUF512 3 Location: 340366-340666 bp Feature: gene Location: 340695-341396 bp Feature: domain Description: SusD_RagB Location: 340752-341382 bp Feature: domain Description: SusD_RagB Location: 340752 -341382 bp Feature: gene Location: 341986-343638 bp Feature: RT Description: RVT_N Location: 342040-342283 bp Feature: RT Description: RVT_N Location: 342 040-342 2 83 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342328-342976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342 32 8-342 976 bp Feature: domain Description: GIIM Note: maturase Location: 343030-343261 bp Feature: domain Description: GIIM Note: maturase Location: 343030-3432 61 bp Feature: gene Location: 343516-345072 bp Feature: domain Description: SusD Location: 343771-344644 bp Feature: domain Description: SusD Location: 343771-344644 bp Feature: gene Location: 345097-348354 bp Feature: domain Description: OMP_RagA_SusC Location: 345181-348349 bp Feature: domain Description: OMP_RagA_SusC Location: 345181-348349 bp Feature: gene Location: 906343-907152 bp Feature: domain Description: DUF1566 Location: 906874-907126 bp Feature: domain Description: DUF1566 Location: 906874-90712 6 bp Feature: gene Location: 907298-907678 bp Feature: domain Description: Avd_like Location: 907325-907631 bp Feature: domain Description: Avd_like Location: 90732 5-907631 bp Feature: gene Location: 907693-909114 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 908065-908800 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 908065-908800 bp Feature: gene Location: 909080-909355 bp Feature: gene Location: 909437-910207 bp Feature: domain Description: PQQ_ABC_repeats Location: 909707-910136 bp Feature: domain Description: PQQ_ABC_repeats Location: 909707-910136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FN3 (smart00060), DUF4957 (pfam16318), DUF5123 (pfam17161), SusD_RagB (pfam07980), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SusD (NF033071), OMP_RagA_SusC (TIGR04056), DUF1566 (pfam07603)
Avd_like (cd16376), RVT-DGRs, PQQ_ABC_repeats (TIGR03866)

Seq: JH951902.1 Bacteroides finegoldii CL09T03C10 genomic scaffold supercont1.2, whole genome shotgun sequence (1241095 bp)
Overview 1 RT 1: 212556-215116 bp 2 RT 2: 252565-258342 bp 3 RT 3: 559049-567542 bp Neighborhood of RT #1 [212556, 215116] RVT-GII Intron_maturas2 MPTase-PolyVal Neighborhood of RT #2 [252565, 258342] RVT-GII YkfC COG3547 COG3547 Neighborhood of RT #3 [559049, 567595] DUF5118 DUF5117 ZnMc_MMP_like_2 DUF4953 DUF5118 DUF5117 ZnMc_MMP_like_2 DUF4953 RVT-GII YkfC TIGR00043 YhdJ Feature: gene Location: 212556-213368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 212562-212640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 212562-212640 bp Feature: domain Description: Intron_maturas2 Location: 212781-213021 bp Feature: domain Description: Intron_maturas2 Location: 212781-213 021 bp Feature: gene Location: 213358-214689 bp Feature: domain Description: MPTase-PolyVal Location: 213640-213949 bp Feature: domain Description: MPTase-PolyVal Location: 213 640-213 949 bp Feature: gene Location: 214742-215116 bp Feature: gene Location: 252565-253425 bp Feature: gene Location: 253425-254330 bp Feature: gene Location: 254637-255953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254832-255447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25483 2-255447 bp Feature: domain Description: YkfC Location: 255609-255726 bp Feature: domain Description: YkfC Location: 255609-255726 bp Feature: gene Location: 256677-257828 bp Feature: domain Description: COG3547 Location: 256689-257055 bp Feature: domain Description: COG3 547 Location: 256689-257055 bp Feature: domain Description: COG3547 Location: 257316-257763 bp Feature: domain Description: COG3 547 Location: 2573 16-257763 bp Feature: gene Location: 257983-258342 bp Feature: gene Location: 559049-561679 bp Feature: domain Description: DUF5118 Location: 559181-559328 bp Feature: domain Description: DUF5118 Location: 559181-5593 28 bp Feature: domain Description: DUF5117 Location: 559358-559940 bp Feature: domain Description: DUF5117 Location: 5593 58-559940 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 559967-560324 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 559967-5603 24 bp Feature: domain Description: DUF4953 Location: 560342-561251 bp Feature: domain Description: DUF4953 Location: 5603 42-561251 bp Feature: gene Location: 561688-564294 bp Feature: domain Description: DUF5118 Location: 561814-561958 bp Feature: domain Description: DUF5118 Location: 561814-561958 bp Feature: domain Description: DUF5117 Location: 561991-562588 bp Feature: domain Description: DUF5117 Location: 561991-562588 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 562615-562942 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 562615-562942 bp Feature: domain Description: DUF4953 Location: 562987-563896 bp Feature: domain Description: DUF4953 Location: 562987-563 896 bp Feature: gene Location: 564932-566248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565127-565742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565127-565742 bp Feature: domain Description: YkfC Location: 565904-566021 bp Feature: domain Description: YkfC Location: 565904-566021 bp Feature: gene Location: 566347-566766 bp Feature: domain Description: TIGR00043 Location: 566458-566755 bp Feature: domain Description: TIGR00043 Location: 566458-566755 bp Feature: gene Location: 566780-567595 bp Feature: domain Description: YhdJ Location: 566798-567542 bp Feature: domain Description: YhdJ Location: 566798-567542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), MPTase-PolyVal (pfam18818), YkfC (COG3344), COG3547 (Transposase ), DUF5118 (pfam17162), DUF5117 (pfam17148), ZnMc_MMP_like_2 (cd04276), DUF4953 (pfam16313), TIGR00043 (rRNA maturation RNase YbeY)
YhdJ (COG0863)