myRT

myRT report for GCA_000307395.1_Para_gold_CL02T12C30_V1

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Seq: JH976473.1 Parabacteroides goldsteinii CL02T12C30 genomic scaffold supercont1.3, whole genome shotgun sequence (1216526 bp)
Overview 1 RT 1: 875192-884502 bp Neighborhood of RT #1 [875192, 884528] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4141 RVT_N RVT-GII GIIM Bac_Flav_CT_J Feature: gene Location: 875192-877027 bp Ori: EKN13748.1 Feature: domain Description: Bac_Flav_CT_G Location: 875195-877025 bp Feature: domain Description: Bac_Flav_CT_G Location: 8751 95-877025 bp Feature: gene Location: 877049-877399 bp Ori: EKN13749.1 Feature: domain Description: Bac_Flav_CT_G Location: 877052-877391 bp Feature: domain Description: Bac_Flav_CT_G Location: 877052-877391 bp Feature: gene Location: 877968-879791 bp Ori: EKN13750.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878232-879054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878232-879054 bp Feature: domain Description: Intron_maturas2 Location: 879228-879468 bp Feature: domain Description: Intron_maturas2 Location: 879228-879468 bp Feature: domain Description: HNHc Note: nucleases Location: 879582-879753 bp Feature: domain Description: HNHc Note: nucleases Location: 879582-879753 bp Feature: gene Location: 880036-880167 bp Feature: gene Location: 880168-880443 bp Feature: gene Location: 880475-880660 bp Ori: EKN13753.1 Feature: domain Description: DUF4141 Location: 880481-880616 bp Feature: domain Description: DUF41 41 Location: 880481 -88061 6 bp Feature: gene Location: 881283-882965 bp Ori: EKN13754.1 Feature: domain Description: RVT_N Location: 881337-881580 bp Feature: domain Description: RVT_N Location: 881 337-881 580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881625-882279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881 625-882279 bp Feature: domain Description: GIIM Note: maturase Location: 882333-882564 bp Feature: domain Description: GIIM Note: maturase Location: 882333-882564 bp Feature: gene Location: 882949-883491 bp Feature: gene Location: 883515-884528 bp Ori: EKN13756.1 Feature: domain Description: Bac_Flav_CT_J Location: 883536-884502 bp Feature: domain Description: Bac_Flav_CT_J Location: 883536-884502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605), RVT_N (pfam13655), GIIM (pfam08388), Bac_Flav_CT_J (TIGR03782)

Seq: JH976478.1 Parabacteroides goldsteinii CL02T12C30 genomic scaffold supercont1.8, whole genome shotgun sequence (178122 bp)
Overview 1 RT 1: 136771-142189 bp Neighborhood of RT #1 [136771, 142189] RVT-UG2 Feature: gene Location: 136771-138219 bp Feature: gene Location: 138222-139928 bp Feature: gene Location: 140344-141882 bp Ori: EKN06301.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 140551-141460 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 140551-141460 bp Feature: gene Location: 141895-141993 bp Feature: gene Location: 142064-142189 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2

Seq: JH976474.1 Parabacteroides goldsteinii CL02T12C30 genomic scaffold supercont1.4, whole genome shotgun sequence (907655 bp)
Overview 1 RT 1: 333634-338066 bp Neighborhood of RT #1 [333634, 338095] DUF3876 DUF4141 RVT_N RVT-GII GIIM Bac_Flav_CT_J Feature: gene Location: 333634-334017 bp Ori: EKN11877.1 Feature: domain Description: DUF3876 Location: 333715-333979 bp Feature: domain Description: DUF3 876 Location: 3 3 3 715-3 3 3 979 bp Feature: gene Location: 334044-334256 bp Ori: EKN11878.1 Feature: domain Description: DUF4141 Location: 334056-334212 bp Feature: domain Description: DUF4141 Location: 3 3 4056-3 3 4212 bp Feature: gene Location: 334879-336561 bp Ori: EKN11879.1 Feature: domain Description: RVT_N Location: 334933-335176 bp Feature: domain Description: RVT_N Location: 3 3 493 3 -3 3 5176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335221-335875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 5221-3 3 5875 bp Feature: domain Description: GIIM Note: maturase Location: 335929-336160 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 5929-3 3 6160 bp Feature: gene Location: 336545-337087 bp Feature: gene Location: 337091-338095 bp Ori: EKN11881.1 Feature: domain Description: Bac_Flav_CT_J Location: 337097-338066 bp Feature: domain Description: Bac_Flav_CT_J Location: 3 3 7097-3 3 8066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), DUF4141 (pfam13605), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_J (TIGR03782)

Seq: JH976471.1 Parabacteroides goldsteinii CL02T12C30 genomic scaffold supercont1.1, whole genome shotgun sequence (1763407 bp)
Overview 1 RT 1: 950051-954142 bp Neighborhood of RT #1 [950051, 954171] DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_J Feature: gene Location: 950051-950176 bp Ori: EKN18939.1 Feature: domain Description: DUF4141 Location: 950060-950174 bp Feature: domain Description: DUF4 14 1 Location: 950060-950174 bp Feature: gene Location: 950224-950364 bp Feature: gene Location: 950766-952601 bp Ori: EKN18941.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951060-951882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951060-951882 bp Feature: domain Description: Intron_maturas2 Location: 952041-952410 bp Feature: domain Description: Intron_maturas2 Location: 95204 1-9524 10 bp Feature: domain Description: HNHc Note: nucleases Location: 952434-952575 bp Feature: domain Description: HNHc Note: nucleases Location: 9524 34 -952575 bp Feature: gene Location: 952594-953130 bp Feature: gene Location: 953158-954171 bp Ori: EKN18943.1 Feature: domain Description: Bac_Flav_CT_J Location: 953179-954142 bp Feature: domain Description: Bac_Flav_CT_J Location: 953179-954 14 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)

Seq: JH976472.1 Parabacteroides goldsteinii CL02T12C30 genomic scaffold supercont1.2, whole genome shotgun sequence (1256768 bp)
Overview 1 RT 1: 380082-383511 bp 2 RT 2: 394591-401758 bp 3 RT 3: 667343-671769 bp 4 RT 4: 678131-684798 bp 5 RT 5: 743894-750660 bp Neighborhood of RT #1 [380082, 383516] DUF3873 RVT-AbiP2 DUF3872 TraO Neighborhood of RT #2 [394591, 401775] Relaxase Relaxase YWFCY VirD4 RVT-GII Intron_maturas2 HNHc COG2865 Neighborhood of RT #3 [667343, 671792] Bac_Flav_CT_J RVT_N RVT-GII GIIM DUF4141 DUF3876 Neighborhood of RT #4 [678131, 684798] Relaxase YWFCY TrwB RVT-GII Intron_maturas2 HNHc Neighborhood of RT #5 [743894, 750662] DUF4998 F5_F8_type_C DUF4959 DUF5126 DUF5000 RVT-GII Intron_maturas2 HNHc DUF4959 SusD SusD_RagB Feature: gene Location: 380082-380309 bp Ori: EKN16498.1 Feature: domain Description: DUF3873 Location: 380091-380283 bp Feature: domain Description: DUF3873 Location: 380091-380283 bp Feature: gene Location: 380314-380796 bp Feature: gene Location: 380925-382430 bp Ori: EKN16500.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 381354-381810 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 38135 4-381810 bp Feature: gene Location: 382481-382915 bp Ori: EKN16501.1 Feature: domain Description: DUF3872 Location: 382505-382898 bp Feature: domain Description: DUF3872 Location: 3825 05 -382898 bp Feature: gene Location: 382935-383516 bp Ori: EKN16502.1 Feature: domain Description: TraO Location: 383013-383511 bp Feature: domain Description: TraO Location: 383013-3835 11 bp Feature: gene Location: 394591-395829 bp Ori: EKN16515.1 Feature: domain Description: Relaxase Location: 394750-395338 bp Feature: domain Description: Relaxase Location: 39475 0-395 338 bp Feature: domain Description: Relaxase Location: 395362-395596 bp Feature: domain Description: Relaxase Location: 395 362-395 5 96 bp Feature: gene Location: 395848-397386 bp Ori: EKN16516.1 Feature: domain Description: YWFCY Location: 395854-396031 bp Feature: domain Description: YWFCY Location: 395 85 4-396031 bp Feature: domain Description: VirD4 Location: 397090-397363 bp Feature: domain Description: VirD4 Location: 397090-397363 bp Feature: gene Location: 397811-399781 bp Ori: EKN16517.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398234-399056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398234-39905 6 bp Feature: domain Description: Intron_maturas2 Location: 399218-399437 bp Feature: domain Description: Intron_maturas2 Location: 399218-399437 bp Feature: domain Description: HNHc Note: nucleases Location: 399602-399758 bp Feature: domain Description: HNHc Note: nucleases Location: 399602-39975 8 bp Feature: gene Location: 399768-400379 bp Feature: gene Location: 400438-401775 bp Ori: EKN16519.1 Feature: domain Description: COG2865 Location: 400450-401758 bp Feature: domain Description: COG2865 Location: 40045 0-40175 8 bp Feature: gene Location: 667343-668368 bp Ori: EKN16725.1 Feature: domain Description: Bac_Flav_CT_J Location: 667361-668327 bp Feature: domain Description: Bac_Flav_CT_J Location: 667361-668327 bp Feature: gene Location: 668388-668930 bp Feature: gene Location: 668914-670596 bp Ori: EKN16727.1 Feature: domain Description: RVT_N Location: 668968-669211 bp Feature: domain Description: RVT_N Location: 668968-669211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 669256-669910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66925 6-669910 bp Feature: domain Description: GIIM Note: maturase Location: 669964-670195 bp Feature: domain Description: GIIM Note: maturase Location: 669964-670195 bp Feature: gene Location: 671219-671431 bp Ori: EKN16728.1 Feature: domain Description: DUF4141 Location: 671231-671387 bp Feature: domain Description: DUF4141 Location: 671231-671387 bp Feature: gene Location: 671436-671792 bp Ori: EKN16729.1 Feature: domain Description: DUF3876 Location: 671499-671769 bp Feature: domain Description: DUF3876 Location: 671499-671769 bp Feature: gene Location: 678131-679369 bp Ori: EKN16739.1 Feature: domain Description: Relaxase Location: 678320-678908 bp Feature: domain Description: Relaxase Location: 678320-678908 bp Feature: gene Location: 679390-680928 bp Ori: EKN16740.1 Feature: domain Description: YWFCY Location: 679396-679573 bp Feature: domain Description: YWFCY Location: 679396-6795 73 bp Feature: domain Description: TrwB Location: 680473-680911 bp Feature: domain Description: TrwB Location: 680473-680911 bp Feature: gene Location: 681353-683323 bp Ori: EKN16741.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 681776-682598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 681776-6825 98 bp Feature: domain Description: Intron_maturas2 Location: 682760-682979 bp Feature: domain Description: Intron_maturas2 Location: 682760-682979 bp Feature: domain Description: HNHc Note: nucleases Location: 683144-683300 bp Feature: domain Description: HNHc Note: nucleases Location: 683144-683300 bp Feature: gene Location: 683310-683921 bp Feature: gene Location: 683968-684798 bp Feature: gene Location: 743894-745015 bp Ori: EKN16797.1 Feature: domain Description: DUF4998 Location: 743954-744542 bp Feature: domain Description: DUF4998 Location: 74395 4-7445 42 bp Feature: domain Description: F5_F8_type_C Location: 744620-744995 bp Feature: domain Description: F5 _F8_type_C Location: 744620-744995 bp Feature: gene Location: 745041-746108 bp Ori: EKN16798.1 Feature: domain Description: DUF4959 Location: 745173-745299 bp Feature: domain Description: DUF495 9 Location: 745 173-745 299 bp Feature: domain Description: DUF5126 Location: 745305-745608 bp Feature: domain Description: DUF5 126 Location: 745 305 -745 608 bp Feature: domain Description: DUF5000 Location: 745698-746094 bp Feature: domain Description: DUF5 000 Location: 745 698-746094 bp Feature: gene Location: 746095-748065 bp Ori: EKN16799.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 746518-747340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7465 18-747340 bp Feature: domain Description: Intron_maturas2 Location: 747502-747721 bp Feature: domain Description: Intron_maturas2 Location: 7475 02-747721 bp Feature: domain Description: HNHc Note: nucleases Location: 747886-748042 bp Feature: domain Description: HNHc Note: nucleases Location: 747886-748042 bp Feature: gene Location: 748490-748732 bp Ori: EKN16800.1 Feature: domain Description: DUF4959 Location: 748538-748718 bp Feature: domain Description: DUF495 9 Location: 7485 38-748718 bp Feature: gene Location: 748761-750662 bp Ori: EKN16801.1 Feature: domain Description: SusD Location: 749073-749526 bp Feature: domain Description: SusD Location: 749073-7495 26 bp Feature: domain Description: SusD_RagB Location: 749769-750660 bp Feature: domain Description: SusD_RagB Location: 749769-75 0660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3873 (pfam12989), RVT-AbiP2, DUF3872 (pfam12988), TraO (pfam10626), Relaxase (pfam03432), YWFCY (pfam14293), VirD4 (COG3505), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)
COG2865 (Predicted transcriptional regulator, contains HTH domain ), Bac_Flav_CT_J (TIGR03782), RVT_N (pfam13655), GIIM (pfam08388), DUF4141 (pfam13605), DUF3876 (pfam12992), TrwB, DUF4998 (pfam16389), F5_F8_type_C (pfam00754), DUF4959 (pfam16323)
DUF5126 (pfam17166), DUF5000 (pfam16391), SusD (NF033071), SusD_RagB (pfam07980)