myRT

myRT report for GCA_000308615.1_ASM30861v1

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Seq: BAGB01000168.1 Nocardia jiangxiensis NBRC 101359 DNA, contig: NJ2_con168, whole genome shotgun sequence (155285 bp)
Overview 1 RT 1: 28133-35502 bp Neighborhood of RT #1 [28133, 35567] InsE PHA02517 RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like RVT_N RVT-GII InsE Feature: gene Location: 28133-28492 bp Feature: domain Description: InsE Location: 28169-28472 bp Feature: domain Description: InsE Location: 281 69-28472 bp Feature: gene Location: 28777-29451 bp Feature: domain Description: PHA02517 Location: 28852-29224 bp Feature: domain Description: PHA0251 7 Location: 28852-29224 bp Feature: gene Location: 29564-30223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29579-29777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29579-29777 bp Feature: domain Description: GIIM Note: maturase Location: 29852-30047 bp Feature: domain Description: GIIM Note: maturase Location: 29852-30047 bp Feature: gene Location: 30420-31424 bp Feature: domain Description: Phage_int_SAM_1 Location: 30465-30714 bp Feature: domain Description: Phage_int_SAM_1 Location: 30465-3071 4 bp Feature: domain Description: INT_RitC_C_like Location: 30795-31344 bp Feature: domain Description: INT_RitC_C_like Location: 30795-31 344 bp Feature: gene Location: 31414-32397 bp Feature: domain Description: INT_RitB_C_like Location: 31750-32329 bp Feature: domain Description: INT_RitB_C_like Location: 31 750-32329 bp Feature: gene Location: 32394-33623 bp Feature: domain Description: Phage_int_SAM_1 Location: 32736-32961 bp Feature: domain Description: Phage_int_SAM_1 Location: 32736-32961 bp Feature: domain Description: INT_RitA_C_like Location: 33051-33588 bp Feature: domain Description: INT_RitA_C_like Location: 33051 -33588 bp Feature: gene Location: 33689-34513 bp Feature: domain Description: RVT_N Location: 33725-33965 bp Feature: domain Description: RVT_N Location: 33725-33965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34022-34412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34022-3441 2 bp Feature: gene Location: 34507-34716 bp Feature: gene Location: 35205-35567 bp Feature: domain Description: InsE Location: 35214-35502 bp Feature: domain Description: InsE Location: 3521 4-35502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), INT_RitA_C_like (cd01188), RVT_N (pfam13655)

Seq: BAGB01000148.1 Nocardia jiangxiensis NBRC 101359 DNA, contig: NJ2_con148, whole genome shotgun sequence (24848 bp)
Overview 1 RT 1: 4574-8748 bp Neighborhood of RT #1 [4574, 8903] HTH_20 HTH_20 Abhydrolase_8 PBP2_LTTR_aromatics_like RVT-GII YbjT Feature: gene Location: 4574-6376 bp Feature: domain Description: HTH_20 Location: 4874-4955 bp Feature: domain Description: HTH_2 0 Location: 4874-4955 bp Feature: domain Description: HTH_20 Location: 5075-5165 bp Feature: domain Description: HTH_2 0 Location: 5075-5165 bp Feature: domain Description: Abhydrolase_8 Location: 5570-6086 bp Feature: domain Description: Abhydrolase_8 Location: 5570-6086 bp Feature: gene Location: 6437-7003 bp Feature: domain Description: PBP2_LTTR_aromatics_like Location: 6668-6938 bp Feature: domain Description: PBP2 _LTTR_aromatics_like Location: 6668-6938 bp Feature: gene Location: 7127-7441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7145-7274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7145-72 74 bp Feature: gene Location: 7714-8157 bp Feature: gene Location: 8154-8903 bp Feature: domain Description: YbjT Location: 8163-8748 bp Feature: domain Description: YbjT Location: 8163-8748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_20 (pfam12840), Abhydrolase_8 (pfam06259), PBP2_LTTR_aromatics_like (cd08414), RVT-GII, YbjT (COG0702)

Seq: BAGB01000074.1 Nocardia jiangxiensis NBRC 101359 DNA, contig: NJ2_con74, whole genome shotgun sequence (79291 bp)
Overview 1 RT 1: 24959-32112 bp Neighborhood of RT #1 [24959, 32112] STKc_PknB_like COG3903 TPR HTH_LUXR RVT-GII GIIM Feature: gene Location: 24959-25561 bp Feature: gene Location: 25942-29223 bp Feature: domain Description: STKc_PknB_like Location: 26020-26767 bp Feature: domain Description: STKc_PknB_like Location: 26020-26767 bp Feature: domain Description: COG3903 Location: 26965-28228 bp Feature: domain Description: COG3 903 Location: 26965-28228 bp Feature: domain Description: TPR Location: 28399-28693 bp Feature: domain Description: TPR Location: 283 99-28693 bp Feature: domain Description: HTH_LUXR Location: 29014-29179 bp Feature: domain Description: HTH_LUXR Location: 29014-29179 bp Feature: gene Location: 29641-30906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29857-30520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29857-3 0520 bp Feature: domain Description: GIIM Note: maturase Location: 30598-30820 bp Feature: domain Description: GIIM Note: maturase Location: 3 0598-3 0820 bp Feature: gene Location: 30957-31316 bp Feature: gene Location: 31504-32112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), COG3903 (Predicted ATPase ), TPR (smart00028), HTH_LUXR (smart00421), RVT-GII, GIIM (pfam08388)