myRT

myRT report for GCA_000308835.1_ASM30883v1

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Seq: BAGN01000418.1 Nocardia vinacea NBRC 16497 DNA, contig: NV4_con418, whole genome shotgun sequence (71011 bp)
Overview 1 RT 1: 52359-59576 bp Neighborhood of RT #1 [52359, 59576] PGDH RVT-GII Resolvase Recombinase Zn_ribbon_recom RVT-GII Intron_maturas2 HNHc Feature: gene Location: 52359-53381 bp Feature: domain Description: PGDH Location: 52377-53364 bp Feature: domain Description: PGDH Location: 52377-53364 bp Feature: gene Location: 53608-54093 bp Feature: gene Location: 54895-55581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55156-55543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551 56-55543 bp Feature: gene Location: 55665-56012 bp Feature: gene Location: 56145-57875 bp Feature: domain Description: Resolvase Location: 56157-56595 bp Feature: domain Description: Resolvase Location: 561 57-56595 bp Feature: domain Description: Recombinase Location: 56685-57048 bp Feature: domain Description: Recombinase Location: 56685-57048 bp Feature: domain Description: Zn_ribbon_recom Location: 57099-57288 bp Feature: domain Description: Zn_ribbon_recom Location: 57099-57288 bp Feature: gene Location: 57898-58938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58030-58222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58030-58222 bp Feature: domain Description: Intron_maturas2 Location: 58312-58540 bp Feature: domain Description: Intron_maturas2 Location: 5831 2-58540 bp Feature: domain Description: HNHc Note: nucleases Location: 58729-58891 bp Feature: domain Description: HNHc Note: nucleases Location: 58729-58891 bp Feature: gene Location: 58955-59134 bp Feature: gene Location: 59367-59576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PGDH (TIGR01327), RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: BAGN01000400.1 Nocardia vinacea NBRC 16497 DNA, contig: NV4_con400, whole genome shotgun sequence (39253 bp)
Overview 1 RT 1: 2515-5560 bp Neighborhood of RT #1 [2515, 5560] RVT-UNC PRK13473 Feature: gene Location: 2515-3054 bp Feature: gene Location: 3071-3217 bp Feature: gene Location: 3155-3442 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3299-3431 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 32 99-3431 bp Feature: gene Location: 3470-4903 bp Feature: domain Description: PRK13473 Location: 3482-4898 bp Feature: domain Description: PRK13473 Location: 3482 -4898 bp Feature: gene Location: 5360-5560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII/RVT-UG4(RVT-UNC), PRK13473 (aminobutyraldehyde dehydrogenase)

Seq: BAGN01000177.1 Nocardia vinacea NBRC 16497 DNA, contig: NV4_con177, whole genome shotgun sequence (68048 bp)
Overview 1 RT 1: 9565-14088 bp Neighborhood of RT #1 [9565, 14088] RVT_N RVT-GII GIIM Feature: gene Location: 9565-9741 bp Feature: gene Location: 9845-10447 bp Feature: gene Location: 10682-12448 bp Feature: domain Description: RVT_N Location: 10760-10997 bp Feature: domain Description: RVT_N Location: 10760-10997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11057-11714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11057-11714 bp Feature: domain Description: GIIM Note: maturase Location: 11768-11999 bp Feature: domain Description: GIIM Note: maturase Location: 11768-11999 bp Feature: gene Location: 12457-12591 bp Feature: gene Location: 13264-14088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)