myRT

myRT report for GCA_000309385.1_ASM30938v1

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Seq: JH976537.1 Nodosilinea nodulosa PCC 7104 genomic scaffold Lepto7104DRAFT_LPD.2, whole genome shotgun sequence (6098684 bp)
Overview 1 RT 1: 74271-79738 bp 2 RT 2: 5039536-5043807 bp Neighborhood of RT #1 [74271, 79738] AAA_31 RVT_N RVT-GII Neighborhood of RT #2 [5039536, 5044091] OmpR RVT_N RVT-GII DDE_Tnp_1 Feature: gene Location: 74271-74573 bp Feature: domain Description: AAA_31 Location: 74274-74565 bp Feature: domain Description: AAA_31 Location: 74274-74565 bp Feature: gene Location: 75239-75721 bp Feature: gene Location: 75950-76879 bp Feature: domain Description: RVT_N Location: 76325-76571 bp Feature: domain Description: RVT_N Location: 76325-76571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76613-76865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7661 3-76865 bp Feature: gene Location: 77808-78263 bp Feature: gene Location: 79556-79738 bp Feature: gene Location: 5039536-5040252 bp Feature: domain Description: OmpR Location: 5039539-5040235 bp Feature: domain Description: OmpR Location: 5039539-5040235 bp Feature: gene Location: 5040582-5041178 bp Feature: gene Location: 5041675-5042310 bp Feature: domain Description: RVT_N Location: 5041777-5042023 bp Feature: domain Description: RVT_N Location: 5041 777-5042023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5042065-5042296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5042065-5042296 bp Feature: gene Location: 5042319-5042714 bp Feature: gene Location: 5042721-5044091 bp Feature: domain Description: DDE_Tnp_1 Location: 5043102-5043807 bp Feature: domain Description: DDE_Tnp_1 Location: 50431 02-5043807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_31 (pfam13614), RVT_N (pfam13655), RVT-GII, OmpR (COG0745), DDE_Tnp_1 (pfam01609)

Seq: JH976538.1 Nodosilinea nodulosa PCC 7104 genomic scaffold Lepto7104DRAFT_LPD.1, whole genome shotgun sequence (792599 bp)
Overview 1 RT 1: 368777-374560 bp Neighborhood of RT #1 [368777, 375042] RVT-CRISPR Cas1_I-II-III Csx1_III-U Cas10_III Cas10_III Feature: gene Location: 368777-368947 bp Feature: gene Location: 369545-369709 bp Feature: gene Location: 369820-371925 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 370027-370633 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 37002 7-370633 bp Feature: domain Description: Cas1_I-II-III Location: 370921-371890 bp Feature: domain Description: Cas1_I-II-III Location: 37092 1-371890 bp Feature: gene Location: 372063-372902 bp Feature: domain Description: Csx1_III-U Location: 372648-372822 bp Feature: domain Description: Csx1_III-U Location: 372 648-372 82 2 bp Feature: gene Location: 373225-375042 bp Feature: domain Description: Cas10_III Location: 373243-373345 bp Feature: domain Description: Cas10_III Location: 3732 43-373345 bp Feature: domain Description: Cas10_III Location: 374272-374560 bp Feature: domain Description: Cas10_III Location: 3742 72 -374560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Csx1_III-U (cl21570), Cas10_III (cl21742)