myRT

myRT report for GCA_000309845.1_Csp_Mad1.0

Download annotations/find similar RTs

Seq: ALXI01000078.1 Clostridium sp. Maddingley MBC34-26 contig_135_1, whole genome shotgun sequence (15458 bp)
Overview 1 RT 1: 6660-10693 bp Neighborhood of RT #1 [6660, 11094] COG4185 RVT-UG2 Arm-DNA-bind_4 Phage_int_SAM_3 INT_ICEBs1_C_like HTH_XRE Feature: gene Location: 6660-6833 bp Feature: gene Location: 6833-7399 bp Ori: EKQ56200.1 Feature: domain Description: COG4185 Location: 6836-7391 bp Feature: domain Description: COG41 85 Location: 6836-7391 bp Feature: gene Location: 7875-9188 bp Ori: EKQ56201.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 8067-8889 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 8067-8889 bp Feature: gene Location: 9258-10436 bp Ori: EKQ56202.1 Feature: domain Description: Arm-DNA-bind_4 Location: 9324-9447 bp Feature: domain Description: Arm-DNA-bind_4 Location: 9324-9447 bp Feature: domain Description: Phage_int_SAM_3 Location: 9465-9642 bp Feature: domain Description: Phage_int_SAM_3 Location: 9465-9642 bp Feature: domain Description: INT_ICEBs1_C_like Location: 9810-10377 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 981 0-1 0377 bp Feature: gene Location: 10513-11094 bp Ori: EKQ56203.1 Feature: domain Description: HTH_XRE Location: 10525-10693 bp Feature: domain Description: HTH_XRE Location: 1 0525-1 0693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4185 (Predicted ABC-type ATPase ), RVT-UG2, Arm-DNA-bind_4 (pfam14657), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), HTH_XRE (smart00530)

Seq: ALXI01000097.1 Clostridium sp. Maddingley MBC34-26 contig_187_2, whole genome shotgun sequence (79523 bp)
Overview 1 RT 1: 74210-79477 bp Neighborhood of RT #1 [74210, 79509] PBP1_GGBP COG2703 RVT-GII GIIM CheW Tar Feature: gene Location: 74210-74929 bp Ori: EKQ54882.1 Feature: domain Description: PBP1_GGBP Location: 74324-74915 bp Feature: domain Description: PBP1_GGBP Location: 7432 4-74915 bp Feature: gene Location: 75173-75565 bp Ori: EKQ54883.1 Feature: domain Description: COG2703 Location: 75176-75560 bp Feature: domain Description: COG2 703 Location: 75176-75560 bp Feature: gene Location: 76041-77456 bp Ori: EKQ54884.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76398-77016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76398-77016 bp Feature: domain Description: GIIM Note: maturase Location: 77067-77295 bp Feature: domain Description: GIIM Note: maturase Location: 77067-772 95 bp Feature: gene Location: 77690-77944 bp Ori: EKQ54885.1 Feature: domain Description: CheW Location: 77705-77936 bp Feature: domain Description: CheW Location: 77705-77936 bp Feature: gene Location: 78109-79509 bp Ori: EKQ54886.1 Feature: domain Description: Tar Location: 78463-79477 bp Feature: domain Description: Tar Location: 78463-79477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP1_GGBP (cd01539), COG2703 (Hemerythrin ), RVT-GII, GIIM (pfam08388), CheW (smart00260), Tar (COG0840)

Seq: ALXI01000016.1 Clostridium sp. Maddingley MBC34-26 contig_29_1, whole genome shotgun sequence (61006 bp)
Overview 1 RT 1: 56339-61006 bp Neighborhood of RT #1 [56339, 61006] YbxI Abhydrolase_1 RVT_N RVT-GII GIIM McrA Feature: gene Location: 56339-57205 bp Ori: EKQ57702.1 Feature: domain Description: YbxI Location: 56492-57200 bp Feature: domain Description: YbxI Location: 56492-57200 bp Feature: gene Location: 57402-58067 bp Ori: EKQ57703.1 Feature: domain Description: Abhydrolase_1 Location: 57492-57735 bp Feature: domain Description: Abhydrolase_1 Location: 57492-5773 5 bp Feature: gene Location: 58303-60120 bp Ori: EKQ57704.1 Feature: domain Description: RVT_N Location: 58360-58600 bp Feature: domain Description: RVT_N Location: 583 60-58600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58660-59311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58660-593 11 bp Feature: domain Description: GIIM Note: maturase Location: 59374-59608 bp Feature: domain Description: GIIM Note: maturase Location: 593 74-59608 bp Feature: domain Description: McrA Location: 59770-60001 bp Feature: domain Description: McrA Location: 59770-60001 bp Feature: gene Location: 60871-61006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbxI (COG2602), Abhydrolase_1 (pfam00561), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)