myRT

myRT report for GCA_000312145.1_ASM31214v1

Download annotations/find similar RTs

Seq: HE978647.1 Alistipes sp. JC50 genomic scaffold, scaffold00001, whole genome shotgun sequence (2238564 bp)
Overview 1 RT 1: 194182-197251 bp 2 RT 2: 1720055-1725217 bp 3 RT 3: 2145867-2149364 bp 4 RT 4: 2172373-2178264 bp Neighborhood of RT #1 [194182, 197505] Avd_like Fib_succ_major RVT-DGRs DUF975 Neighborhood of RT #2 [1720055, 1725217] Relaxase RVT-GII Intron_maturas2 HNHc Neighborhood of RT #3 [2145867, 2149364] Fib_succ_major Fib_succ_major RVT-DGRs PepSY_like Neighborhood of RT #4 [2172373, 2178725] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF3876 DUF4141 Feature: gene Location: 194182-194988 bp Feature: domain Description: Avd_like Location: 194212-194530 bp Feature: domain Description: Avd_like Location: 1 9421 2-1 94530 bp Feature: gene Location: 195001-195438 bp Feature: domain Description: Fib_succ_major Location: 195211-195418 bp Feature: domain Description: Fib_succ_major Location: 1 9521 1 -1 9541 8 bp Feature: gene Location: 195464-196702 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 195665-196463 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 95665-1 96463 bp Feature: gene Location: 196732-196863 bp Feature: gene Location: 196885-197505 bp Feature: domain Description: DUF975 Location: 196909-197251 bp Feature: domain Description: DUF975 Location: 1 96909-1 97251 bp Feature: gene Location: 1720055-1720408 bp Feature: domain Description: Relaxase Location: 1720124-1720391 bp Feature: domain Description: Relaxase Location: 1 7201 24-1 720391 bp Feature: gene Location: 1720456-1720737 bp Feature: gene Location: 1720724-1722532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1720988-1721810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 720988-1 721 81 0 bp Feature: domain Description: Intron_maturas2 Location: 1721906-1722185 bp Feature: domain Description: Intron_maturas2 Location: 1 721 906-1 7221 85 bp Feature: domain Description: HNHc Note: nucleases Location: 1722362-1722509 bp Feature: domain Description: HNHc Note: nucleases Location: 1 722362-1 722509 bp Feature: gene Location: 1723078-1723365 bp Feature: gene Location: 1724855-1725217 bp Feature: gene Location: 2145867-2146076 bp Feature: gene Location: 2145823-2147100 bp Feature: domain Description: Fib_succ_major Location: 2146117-2146267 bp Feature: domain Description: Fib_succ_major Location: 21 461 1 7-21 46267 bp Feature: domain Description: Fib_succ_major Location: 2146903-2147065 bp Feature: domain Description: Fib_succ_major Location: 21 46903-21 47065 bp Feature: gene Location: 2147113-2148393 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2147308-2148088 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21 47308-21 48088 bp Feature: gene Location: 2148411-2148866 bp Feature: domain Description: PepSY_like Location: 2148606-2148852 bp Feature: domain Description: PepSY_like Location: 21 48606-21 48852 bp Feature: gene Location: 2148888-2149364 bp Feature: gene Location: 2172373-2172711 bp Feature: domain Description: DUF4133 Location: 2172391-2172661 bp Feature: domain Description: DUF41 33 Location: 21 72391 -21 72661 bp Feature: gene Location: 2172695-2175091 bp Feature: domain Description: Bac_Flav_CT_G Location: 2172698-2175083 bp Feature: domain Description: Bac_Flav_CT_G Location: 21 72698-21 75083 bp Feature: gene Location: 2175640-2177463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2175904-2176726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 75904-21 76726 bp Feature: domain Description: Intron_maturas2 Location: 2176900-2177104 bp Feature: domain Description: Intron_maturas2 Location: 21 76900-21 771 04 bp Feature: domain Description: HNHc Note: nucleases Location: 2177254-2177425 bp Feature: domain Description: HNHc Note: nucleases Location: 21 77254-21 77425 bp Feature: gene Location: 2177708-2178073 bp Feature: domain Description: DUF3876 Location: 2177786-2178056 bp Feature: domain Description: DUF3876 Location: 21 77786-21 78056 bp Feature: gene Location: 2178096-2178725 bp Feature: domain Description: DUF4141 Location: 2178108-2178264 bp Feature: domain Description: DUF41 41 Location: 21 781 08-21 78264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), Fib_succ_major (TIGR02145), RVT-DGRs, DUF975 (pfam06161), Relaxase (pfam03432), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PepSY_like (pfam11396), DUF4133 (pfam13571)
Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992), DUF4141 (pfam13605)