myRT

myRT report for GCA_000312665.1_ASM31266v1

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Seq: HF536774.1 Rhizobium mesoamericanum STM3625 genomic scaffold, ANZ_1639, whole genome shotgun sequence (108298 bp)
Overview 1 RT 1: 3266-8499 bp 2 RT 2: 20996-23989 bp 3 RT 3: 96133-99470 bp Neighborhood of RT #1 [3266, 8627] TnpB_IS66 RVT-GII PinE COG4644 COG4644 Neighborhood of RT #2 [20996, 24081] PRK09183 RVT-GII GIIM DEDD_Tnp_IS110 Neighborhood of RT #3 [96133, 99470] COG3547 COG3415 RVT-GII GIIM INT_RitB_C_like Feature: gene Location: 3266-3535 bp Feature: domain Description: TnpB_IS66 Location: 3287-3497 bp Feature: domain Description: TnpB_IS66 Location: 3287-3497 bp Feature: gene Location: 3699-4136 bp Feature: gene Location: 4161-4907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4167-4809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 67-4809 bp Feature: gene Location: 4910-5497 bp Feature: domain Description: PinE Location: 4922-5477 bp Feature: domain Description: PinE Location: 4922-5477 bp Feature: gene Location: 5652-8627 bp Feature: domain Description: COG4644 Location: 5664-5994 bp Feature: domain Description: COG4644 Location: 5664-5994 bp Feature: domain Description: COG4644 Location: 7527-8499 bp Feature: domain Description: COG4644 Location: 7527-8499 bp Feature: gene Location: 20996-21304 bp Feature: gene Location: 21301-21609 bp Feature: domain Description: PRK09183 Location: 21316-21589 bp Feature: domain Description: PRK091 83 Location: 21 31 6-21 589 bp Feature: gene Location: 22081-22827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22087-22294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22087-22294 bp Feature: domain Description: GIIM Note: maturase Location: 22342-22573 bp Feature: domain Description: GIIM Note: maturase Location: 22342-22573 bp Feature: gene Location: 23029-23280 bp Feature: gene Location: 23548-24081 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 23686-23989 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 23686-23989 bp Feature: gene Location: 96133-97200 bp Feature: domain Description: COG3547 Location: 96190-97084 bp Feature: domain Description: COG3547 Location: 961 90-97084 bp Feature: gene Location: 97313-97666 bp Feature: domain Description: COG3415 Location: 97319-97520 bp Feature: domain Description: COG341 5 Location: 9731 9-97520 bp Feature: gene Location: 98186-98947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98210-98558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9821 0-98558 bp Feature: domain Description: GIIM Note: maturase Location: 98639-98861 bp Feature: domain Description: GIIM Note: maturase Location: 98639-98861 bp Feature: gene Location: 99054-99182 bp Feature: domain Description: INT_RitB_C_like Location: 99057-99177 bp Feature: domain Description: INT_RitB_C_like Location: 99057-991 77 bp Feature: gene Location: 99228-99470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, PinE (COG1961), COG4644 (Transposase and inactivated derivatives, TnpA family ), PRK09183 (transposase/IS protein; Provisional), GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase ), COG3415 (Transposase ), INT_RitB_C_like (cd00797)