myRT

myRT report for GCA_000315015.1_ASM31501v1

Download annotations/find similar RTs

Seq: BAEP01000042.1 Paraglaciecola mesophila KMM 241 DNA, contig: CTG042, whole genome shotgun sequence (2354 bp)
Overview 1 RT 1: 653-2118 bp Neighborhood of RT #1 [653, 2288] 2A76 RVT-GII GIIM Feature: gene Location: 653-1312 bp Ori: GAC24317.1 Gene: rhtC Feature: domain Description: 2A76 Location: 719-1277 bp Feature: domain Description: 2A76 Location: 71 9-1 277 bp Feature: gene Location: 1389-2288 bp Ori: GAC24318.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1392-1851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 392-1 851 bp Feature: domain Description: GIIM Note: maturase Location: 1896-2118 bp Feature: domain Description: GIIM Note: maturase Location: 1 896-21 1 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2A76 (TIGR00949), RVT-GII, GIIM (pfam08388)

Seq: BAEP01000023.1 Paraglaciecola mesophila KMM 241 DNA, contig: CTG023, whole genome shotgun sequence (223850 bp)
Overview 1 RT 1: 171049-178970 bp Neighborhood of RT #1 [171049, 178970] HsdM RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like RVT-UG1 Feature: gene Location: 171049-172515 bp Ori: GAC23507.1 Gene: hsdM Feature: domain Description: HsdM Location: 171055-172495 bp Feature: domain Description: HsdM Location: 171055-172 495 bp Feature: gene Location: 172515-174275 bp Ori: GAC23508.1 Gene: hsdS Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 172830-173388 bp Feature: domain Description: RMtype1_S_SonII-TRD2 -CR2 _like Location: 172 830-173388 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 173691-174255 bp Feature: domain Description: RMtype1_S_SonII-TRD2 -CR2 _like Location: 173691-1742 55 bp Feature: gene Location: 174339-178019 bp Ori: GAC23509.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 174963-175455 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 174963-175455 bp Feature: gene Location: 178025-178648 bp Feature: gene Location: 178854-178970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RMtype1_S_SonII-TRD2-CR2_like (cd17246), RVT-UG1