myRT

myRT report for GCA_000315485.1_Bact_olei_YIT_12058_V1

Download annotations/find similar RTs

Seq: JH992945.1 Bacteroides oleiciplenus YIT 12058 genomic scaffold supercont1.6, whole genome shotgun sequence (422566 bp)
Overview 1 RT 1: 92395-100750 bp 2 RT 2: 280061-284483 bp Neighborhood of RT #1 [92395, 100857] Imm17 TraG-D_C RVT_N RVT-GII GIIM RVT_N RVT-GII GIIM YWFCY Relaxase Relaxase Neighborhood of RT #2 [280061, 284483] RVT-DGRs Feature: gene Location: 92395-92676 bp Ori: EKU87916.1 Feature: domain Description: Imm17 Location: 92485-92662 bp Feature: domain Description: Imm1 7 Location: 92485-92662 bp Feature: gene Location: 92831-94003 bp Ori: EKU87917.1 Feature: domain Description: TraG-D_C Location: 93377-93710 bp Feature: domain Description: TraG-D_C Location: 93377-9371 0 bp Feature: gene Location: 94044-95696 bp Ori: EKU87918.1 Feature: domain Description: RVT_N Location: 94098-94341 bp Feature: domain Description: RVT_N Location: 94098-94341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94386-95034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94386-95034 bp Feature: domain Description: GIIM Note: maturase Location: 95088-95319 bp Feature: domain Description: GIIM Note: maturase Location: 95088-9531 9 bp Feature: gene Location: 96461-98113 bp Ori: EKU87919.1 Feature: domain Description: RVT_N Location: 96515-96758 bp Feature: domain Description: RVT_N Location: 9651 5-96758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96803-97451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96803-97451 bp Feature: domain Description: GIIM Note: maturase Location: 97505-97736 bp Feature: domain Description: GIIM Note: maturase Location: 97505-97736 bp Feature: gene Location: 98751-99674 bp Ori: EKU87920.1 Feature: domain Description: YWFCY Location: 98757-98934 bp Feature: domain Description: YWFCY Location: 98757-98934 bp Feature: gene Location: 99712-100857 bp Ori: EKU87921.1 Feature: domain Description: Relaxase Location: 99898-100213 bp Feature: domain Description: Relaxase Location: 99898-1 0021 3 bp Feature: domain Description: Relaxase Location: 100516-100750 bp Feature: domain Description: Relaxase Location: 1 0051 6-1 00750 bp Feature: gene Location: 280061-281083 bp Feature: gene Location: 281104-282423 bp Feature: gene Location: 282940-283755 bp Ori: EKU88105.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 283273-283597 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 283273-283597 bp Feature: gene Location: 283775-283951 bp Feature: gene Location: 284136-284483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Imm17 (pfam15562), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293), Relaxase (pfam03432), RVT-DGRs

Seq: JH992950.1 Bacteroides oleiciplenus YIT 12058 genomic scaffold supercont1.11, whole genome shotgun sequence (11749 bp)
Overview 1 RT 1: 4048-9111 bp Neighborhood of RT #1 [4048, 9111] Tra8 RVT-GII GIIM RrnaAD Feature: gene Location: 4048-4356 bp Feature: gene Location: 4610-5590 bp Ori: EKU87339.1 Feature: domain Description: Tra8 Location: 4619-5564 bp Feature: domain Description: Tra8 Location: 4619-5564 bp Feature: gene Location: 6031-7326 bp Ori: EKU87340.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6226-6841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 2 6-6841 bp Feature: domain Description: GIIM Note: maturase Location: 6913-7126 bp Feature: domain Description: GIIM Note: maturase Location: 6913-712 6 bp Feature: gene Location: 8072-8872 bp Ori: EKU87341.1 Feature: domain Description: RrnaAD Location: 8099-8837 bp Feature: domain Description: RrnaAD Location: 8099-8837 bp Feature: gene Location: 8872-9111 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-GII, GIIM (pfam08388), RrnaAD (pfam00398)

Seq: JH992948.1 Bacteroides oleiciplenus YIT 12058 genomic scaffold supercont1.9, whole genome shotgun sequence (50350 bp)
Overview 1 RT 1: 19382-28311 bp Neighborhood of RT #1 [19382, 28311] Relaxase YWFCY RVT_N RVT-GII GIIM RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 19382-20629 bp Ori: EKU87389.1 Feature: domain Description: Relaxase Location: 19562-19943 bp Feature: domain Description: Relaxase Location: 19562-19943 bp Feature: gene Location: 20660-21586 bp Ori: EKU87390.1 Feature: domain Description: YWFCY Location: 20669-20846 bp Feature: domain Description: YWFCY Location: 20669-20846 bp Feature: gene Location: 22224-23876 bp Ori: EKU87391.1 Feature: domain Description: RVT_N Location: 22278-22521 bp Feature: domain Description: RVT_N Location: 22278-22521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22566-23214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22566-23 214 bp Feature: domain Description: GIIM Note: maturase Location: 23268-23499 bp Feature: domain Description: GIIM Note: maturase Location: 23 268-23 499 bp Feature: gene Location: 24641-26293 bp Ori: EKU87392.1 Feature: domain Description: RVT_N Location: 24695-24938 bp Feature: domain Description: RVT_N Location: 24695-2493 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24983-25631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24983 -2563 1 bp Feature: domain Description: GIIM Note: maturase Location: 25685-25916 bp Feature: domain Description: GIIM Note: maturase Location: 25685-25916 bp Feature: gene Location: 26334-27503 bp Ori: EKU87393.1 Feature: domain Description: TraG-D_C Location: 26880-27210 bp Feature: domain Description: TraG-D_C Location: 26880-27210 bp Feature: gene Location: 27556-28311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: JH992940.1 Bacteroides oleiciplenus YIT 12058 genomic scaffold supercont1.1, whole genome shotgun sequence (1947083 bp)
Overview 1 RT 1: 716355-721664 bp 2 RT 2: 742608-747462 bp 3 RT 3: 1772501-1784753 bp Neighborhood of RT #1 [716355, 721664] RVT-GII GIIM Neighborhood of RT #2 [742608, 747462] RVT-UG27 Neighborhood of RT #3 [1772501, 1784770] SusD-like OMP_RagA_SusC RVT_N RVT-GII GIIM RVT_N RVT-GII GIIM STN OMP_RagA_SusC COG3537 Feature: gene Location: 716355-716822 bp Feature: gene Location: 716846-717583 bp Feature: gene Location: 717709-719103 bp Ori: EKU92164.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 718039-718657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 718039-718657 bp Feature: domain Description: GIIM Note: maturase Location: 718714-718942 bp Feature: domain Description: GIIM Note: maturase Location: 718714 -71894 2 bp Feature: gene Location: 719651-720154 bp Feature: gene Location: 720282-721664 bp Feature: gene Location: 742608-743702 bp Feature: gene Location: 743724-744185 bp Feature: gene Location: 745217-746482 bp Ori: EKU92209.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 745406-746042 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 74 54 06-74 604 2 bp Feature: gene Location: 746472-746873 bp Feature: gene Location: 746860-747462 bp Feature: gene Location: 1772501-1774123 bp Ori: EKU91346.1 Feature: domain Description: SusD-like Location: 1772588-1774106 bp Feature: domain Description: SusD-like Location: 1772588-1774 106 bp Feature: gene Location: 1774137-1776623 bp Ori: EKU91347.1 Feature: domain Description: OMP_RagA_SusC Location: 1774197-1776618 bp Feature: domain Description: OMP_RagA_SusC Location: 1774 197-1776618 bp Feature: gene Location: 1777270-1778922 bp Ori: EKU91348.1 Feature: domain Description: RVT_N Location: 1777324-1777567 bp Feature: domain Description: RVT_N Location: 1777324 -1777567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1777612-1778260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1777612-1778260 bp Feature: domain Description: GIIM Note: maturase Location: 1778314-1778545 bp Feature: domain Description: GIIM Note: maturase Location: 1778314 -177854 5 bp Feature: gene Location: 1779687-1781339 bp Ori: EKU91349.1 Feature: domain Description: RVT_N Location: 1779741-1779984 bp Feature: domain Description: RVT_N Location: 177974 1-1779984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1780029-1780677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1780029-1780677 bp Feature: domain Description: GIIM Note: maturase Location: 1780731-1780962 bp Feature: domain Description: GIIM Note: maturase Location: 1780731-1780962 bp Feature: gene Location: 1781452-1782300 bp Ori: EKU91350.1 Feature: domain Description: STN Location: 1781617-1781767 bp Feature: domain Description: STN Location: 1781617-1781767 bp Feature: domain Description: OMP_RagA_SusC Location: 1781809-1782292 bp Feature: domain Description: OMP_RagA_SusC Location: 1781809-1782292 bp Feature: gene Location: 1782491-1784770 bp Ori: EKU91351.1 Feature: domain Description: COG3537 Location: 1782551-1784753 bp Feature: domain Description: COG3537 Location: 1782551-1784 753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT-UG27, SusD-like (pfam12741), OMP_RagA_SusC (TIGR04056), RVT_N (pfam13655), STN (smart00965), COG3537 (Putative alpha-1,2-mannosidase )

Seq: JH992954.1 Bacteroides oleiciplenus YIT 12058 genomic scaffold supercont1.15, whole genome shotgun sequence (2512 bp)
Overview 1 RT 1: 217-1492 bp Neighborhood of RT #1 [217, 1869] RVT_N RVT-GII GIIM Feature: gene Location: 217-1869 bp Ori: EKU87304.1 Feature: domain Description: RVT_N Location: 271-514 bp Feature: domain Description: RVT_N Location: 271-5 14 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559-1207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 5 9-1207 bp Feature: domain Description: GIIM Note: maturase Location: 1261-1492 bp Feature: domain Description: GIIM Note: maturase Location: 1261-1492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JH992944.1 Bacteroides oleiciplenus YIT 12058 genomic scaffold supercont1.5, whole genome shotgun sequence (764228 bp)
Overview 1 RT 1: 86169-91663 bp Neighborhood of RT #1 [86169, 91692] def secD RVT-Retrons Adenine_glyco MFS_DtpA_like Feature: gene Location: 86169-86729 bp Ori: EKU88777.1 Feature: domain Description: def Location: 86172-86703 bp Feature: domain Description: def Location: 86 172-86 703 bp Feature: gene Location: 87007-87831 bp Ori: EKU88778.1 Feature: domain Description: secD Location: 87139-87382 bp Feature: domain Description: secD Location: 87139-87382 bp Feature: gene Location: 87828-88949 bp Ori: EKU88779.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 88140-88692 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 88140-886 92 bp Feature: gene Location: 89421-90026 bp Ori: EKU88780.1 Feature: domain Description: Adenine_glyco Location: 89454-89982 bp Feature: domain Description: Adenine_glyco Location: 89454-89982 bp Feature: gene Location: 90154-91692 bp Ori: EKU88781.1 Feature: domain Description: MFS_DtpA_like Location: 90175-91663 bp Feature: domain Description: MFS_DtpA_like Location: 90175-916 6 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT def (PRK00150), secD (TIGR01129), RVT-Retrons, Adenine_glyco (pfam03352), MFS_DtpA_like (cd17346)