myRT

myRT report for GCA_000315565.1_ASM31556v1

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Seq: JH992900.1 Mastigocladopsis repens PCC 10914 genomic scaffold Mas10914DRAFT_scaffold2.2, whole genome shotgun sequence (378280 bp)
Overview 1 RT 1: 159918-167223 bp Neighborhood of RT #1 [159918, 167264] COG3292 COG3292 COG3292 COG3292 DnaK RVT_N RVT-GII PinE Zn_ribbon_recom RVT-GII GIIM McrA BaeS Feature: gene Location: 159918-161792 bp Feature: domain Description: COG3292 Location: 160092-160392 bp Feature: domain Description: COG3292 Location: 1 60092-1 60392 bp Feature: domain Description: COG3292 Location: 160770-161163 bp Feature: domain Description: COG3292 Location: 1 60770-1 61 1 63 bp Feature: domain Description: COG3292 Location: 161220-161520 bp Feature: domain Description: COG3292 Location: 1 61 220-1 61 520 bp Feature: domain Description: COG3292 Location: 161559-161781 bp Feature: domain Description: COG3292 Location: 1 61 559-1 61 781 bp Feature: gene Location: 161822-162049 bp Feature: domain Description: DnaK Location: 161837-162032 bp Feature: domain Description: DnaK Location: 1 61 837-1 62032 bp Feature: gene Location: 162781-163263 bp Feature: domain Description: RVT_N Location: 162784-162985 bp Feature: domain Description: RVT_N Location: 1 62784-1 62985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163027-163261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 63027-1 63261 bp Feature: gene Location: 163281-165326 bp Feature: domain Description: PinE Location: 163323-163992 bp Feature: domain Description: PinE Location: 1 63323-1 63992 bp Feature: domain Description: Zn_ribbon_recom Location: 164265-164424 bp Feature: domain Description: Zn_ribbon_recom Location: 1 64265-1 64424 bp Feature: gene Location: 165330-165641 bp Feature: gene Location: 165701-166180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165707-166133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 65707-1 661 33 bp Feature: gene Location: 166320-166994 bp Feature: domain Description: GIIM Note: maturase Location: 166353-166584 bp Feature: domain Description: GIIM Note: maturase Location: 1 66353-1 66584 bp Feature: domain Description: McrA Location: 166665-166950 bp Feature: domain Description: McrA Location: 1 66665-1 66950 bp Feature: gene Location: 166923-167264 bp Feature: domain Description: BaeS Location: 166986-167223 bp Feature: domain Description: BaeS Location: 1 66986-1 67223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3292 (Periplasmic ligand-binding sensor domain ), DnaK (COG0443), RVT_N (pfam13655), RVT-GII, PinE (COG1961), Zn_ribbon_recom (pfam13408), GIIM (pfam08388), McrA (COG4058), BaeS (COG0642)

Seq: JH992901.1 Mastigocladopsis repens PCC 10914 genomic scaffold Mas10914DRAFT_scaffold1.1, whole genome shotgun sequence (6070411 bp)
Overview 1 RT 1: 380127-385971 bp 2 RT 2: 412114-418250 bp 3 RT 3: 1014111-1018805 bp 4 RT 4: 1689532-1692093 bp 5 RT 5: 2763854-2775623 bp 6 RT 6: 3910225-3917786 bp 7 RT 7: 4830448-4837030 bp 8 RT 8: 5460812-5463695 bp Neighborhood of RT #1 [380127, 386000] YfmG Avd_like RVT-DGRs PRK06464 Neighborhood of RT #2 [412114, 418250] DUF4238 RVT_N RVT-GII RVT-GII Intron_maturas2 HNHc RVT-GII RVT-GII McrA Neighborhood of RT #3 [1014111, 1018843] TIGR03985 SpoT RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Neighborhood of RT #4 [1689532, 1692093] HTH_XRE RVT-Retrons Neighborhood of RT #5 [2763854, 2775623] ACR_tran RVT-GII GIIM McrA RVT-GII PinE Zn_ribbon_recom RVT-GII RVT_N RVT-GII RVT_N RVT-GII Neighborhood of RT #6 [3910225, 3917788] DUF3500 McrA RVT-GII GIIM RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII FepC FepD Neighborhood of RT #7 [4830448, 4837074] PRK06172 RVT_N RVT-GII RVT-GII Intron_maturas2 HNHc RVT-GII GIIM McrA DltE Neighborhood of RT #8 [5460812, 5463820] RVT_N RVT-GII CHAT GUN4 Feature: gene Location: 380127-381701 bp Feature: domain Description: YfmG Location: 380877-381675 bp Feature: domain Description: YfmG Location: 380877-381675 bp Feature: gene Location: 381889-382230 bp Feature: domain Description: Avd_like Location: 381907-382213 bp Feature: domain Description: Avd_like Location: 381907-382 2 13 bp Feature: gene Location: 382256-383314 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 382460-383108 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 382 460-383108 bp Feature: gene Location: 383295-383588 bp Feature: gene Location: 383637-386000 bp Feature: domain Description: PRK06464 Location: 383646-385971 bp Feature: domain Description: PRK06464 Location: 383646-385971 bp Feature: gene Location: 412114-413103 bp Feature: domain Description: DUF4238 Location: 412129-412978 bp Feature: domain Description: DUF42 38 Location: 412 12 9-412 978 bp Feature: gene Location: 413534-413698 bp Feature: gene Location: 414019-414606 bp Feature: domain Description: RVT_N Location: 414055-414295 bp Feature: domain Description: RVT_N Location: 414055-4142 95 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 414352-414592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 414352 -414592 bp Feature: gene Location: 415046-416881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415358-416153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415358-416153 bp Feature: domain Description: Intron_maturas2 Location: 416255-416489 bp Feature: domain Description: Intron_maturas2 Location: 4162 55-416489 bp Feature: domain Description: HNHc Note: nucleases Location: 416678-416837 bp Feature: domain Description: HNHc Note: nucleases Location: 416678-416837 bp Feature: gene Location: 417021-417368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417030-417180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417030-417180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417186-417351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417186-417351 bp Feature: gene Location: 417394-417936 bp Feature: domain Description: McrA Location: 417583-417907 bp Feature: domain Description: McrA Location: 417583-417907 bp Feature: gene Location: 418053-418250 bp Feature: gene Location: 1014111-1015625 bp Feature: domain Description: TIGR03985 Location: 1014846-1015623 bp Feature: domain Description: TIGR03985 Location: 1014846-101562 3 bp Feature: gene Location: 1015658-1016257 bp Feature: domain Description: SpoT Location: 1015676-1016153 bp Feature: domain Description: SpoT Location: 1015676-1016153 bp Feature: gene Location: 1016250-1017311 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1016457-1017063 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1016457-1017063 bp Feature: gene Location: 1017371-1018567 bp Feature: domain Description: Cas1_I-II-III Location: 1017575-1018529 bp Feature: domain Description: Cas1_I-II-III Location: 1017575-101852 9 bp Feature: gene Location: 1018568-1018843 bp Feature: domain Description: Cas2_I_II_III Location: 1018577-1018805 bp Feature: domain Description: Cas2 _I_II_III Location: 1018577-1018805 bp Feature: gene Location: 1689532-1689696 bp Feature: gene Location: 1689754-1690062 bp Feature: domain Description: HTH_XRE Location: 1689766-1689928 bp Feature: domain Description: HTH_XRE Location: 1689766-168992 8 bp Feature: gene Location: 1689989-1690942 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1690214-1690745 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16902 14-1690745 bp Feature: gene Location: 1690965-1691723 bp Feature: gene Location: 1691830-1692093 bp Feature: gene Location: 2763854-2767123 bp Feature: domain Description: ACR_tran Location: 2763893-2767058 bp Feature: domain Description: ACR_tran Location: 2 763893-2 767058 bp Feature: gene Location: 2767199-2767648 bp Feature: gene Location: 2767850-2768902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2767883-2768111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 767883-2 768111 bp Feature: domain Description: GIIM Note: maturase Location: 2768195-2768423 bp Feature: domain Description: GIIM Note: maturase Location: 2 768195-2 76842 3 bp Feature: domain Description: McrA Location: 2768519-2768828 bp Feature: domain Description: McrA Location: 2 768519-2 76882 8 bp Feature: gene Location: 2769092-2769616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2769098-2769554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 769098-2 769554 bp Feature: gene Location: 2769676-2769987 bp Feature: gene Location: 2769991-2772036 bp Feature: domain Description: PinE Location: 2770033-2770702 bp Feature: domain Description: PinE Location: 2 770033-2 770702 bp Feature: domain Description: Zn_ribbon_recom Location: 2770975-2771134 bp Feature: domain Description: Zn_ribbon_recom Location: 2 770975-2 771134 bp Feature: gene Location: 2772054-2772545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2772315-2772543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 772 315-2 772 543 bp Feature: gene Location: 2772776-2772991 bp Feature: gene Location: 2773036-2773629 bp Feature: domain Description: RVT_N Location: 2773096-2773342 bp Feature: domain Description: RVT_N Location: 2 773096-2 773342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2773384-2773615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 773384-2 773615 bp Feature: gene Location: 2774205-2774759 bp Feature: domain Description: RVT_N Location: 2774313-2774559 bp Feature: domain Description: RVT_N Location: 2 774313-2 774559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2774601-2774742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 774601-2 774742 bp Feature: gene Location: 2774957-2775151 bp Feature: gene Location: 2775429-2775623 bp Feature: gene Location: 3910225-3911457 bp Feature: domain Description: DUF3500 Location: 3910465-3911407 bp Feature: domain Description: DUF3500 Location: 3910465-3911407 bp Feature: gene Location: 3911618-3911953 bp Feature: domain Description: McrA Location: 3911624-3911897 bp Feature: domain Description: McrA Location: 391162 4-3911897 bp Feature: gene Location: 3912018-3912740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3912051-3912390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3912 051-3912 390 bp Feature: domain Description: GIIM Note: maturase Location: 3912492-3912711 bp Feature: domain Description: GIIM Note: maturase Location: 3912 492 -3912 711 bp Feature: gene Location: 3912943-3914778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3913255-3914050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39132 55-3914050 bp Feature: domain Description: Intron_maturas2 Location: 3914152-3914386 bp Feature: domain Description: Intron_maturas2 Location: 3914152 -3914386 bp Feature: domain Description: HNHc Note: nucleases Location: 3914575-3914734 bp Feature: domain Description: HNHc Note: nucleases Location: 3914575-3914734 bp Feature: gene Location: 3914958-3915173 bp Feature: gene Location: 3915218-3915712 bp Feature: domain Description: RVT_N Location: 3915221-3915422 bp Feature: domain Description: RVT_N Location: 39152 2 1-391542 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3915464-3915698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3915464-3915698 bp Feature: gene Location: 3915933-3916742 bp Feature: domain Description: FepC Location: 3915963-3916725 bp Feature: domain Description: FepC Location: 3915963-391672 5 bp Feature: gene Location: 3916739-3917788 bp Feature: domain Description: FepD Location: 3916814-3917786 bp Feature: domain Description: FepD Location: 3916814-3917786 bp Feature: gene Location: 4830448-4831197 bp Feature: domain Description: PRK06172 Location: 4830457-4831192 bp Feature: domain Description: PRK06172 Location: 4830457-4831192 bp Feature: gene Location: 4831637-4832125 bp Feature: gene Location: 4832028-4832606 bp Feature: domain Description: RVT_N Location: 4832070-4832316 bp Feature: domain Description: RVT_N Location: 4832 070-4832 316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4832358-4832592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4832 358-4832 592 bp Feature: gene Location: 4833046-4834881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4833358-4834153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4833358-4834153 bp Feature: domain Description: Intron_maturas2 Location: 4834255-4834489 bp Feature: domain Description: Intron_maturas2 Location: 48342 55-4834489 bp Feature: domain Description: HNHc Note: nucleases Location: 4834678-4834837 bp Feature: domain Description: HNHc Note: nucleases Location: 4834678-4834837 bp Feature: gene Location: 4835084-4835806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4835117-4835456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4835117-4835456 bp Feature: domain Description: GIIM Note: maturase Location: 4835558-4835777 bp Feature: domain Description: GIIM Note: maturase Location: 4835558-4835777 bp Feature: gene Location: 4835871-4836206 bp Feature: domain Description: McrA Location: 4835880-4836150 bp Feature: domain Description: McrA Location: 4835880-4836150 bp Feature: gene Location: 4836547-4837074 bp Feature: domain Description: DltE Location: 4836550-4837030 bp Feature: domain Description: DltE Location: 4836550-4837030 bp Feature: gene Location: 5460812-5460982 bp Feature: gene Location: 5461218-5461382 bp Feature: gene Location: 5461703-5462290 bp Feature: domain Description: RVT_N Location: 5461739-5461979 bp Feature: domain Description: RVT_N Location: 5461739-5461979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5462036-5462276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5462 036-5462 2 76 bp Feature: gene Location: 5462509-5462757 bp Feature: gene Location: 5462804-5463820 bp Feature: domain Description: CHAT Location: 5462876-5463209 bp Feature: domain Description: CHAT Location: 5462 876-54632 09 bp Feature: domain Description: GUN4 Location: 5463338-5463695 bp Feature: domain Description: GUN4 Location: 5463338-5463695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, PRK06464 (phosphoenolpyruvate synthase; Validated), DUF4238 (pfam14022), RVT_N (pfam13655), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), McrA (COG4058)
TIGR03985 (CRISPR-associated protein, TIGR03985 family), SpoT (COG0317), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), HTH_XRE (smart00530), RVT-Retrons, ACR_tran (pfam00873), GIIM (pfam08388), PinE (COG1961)
Zn_ribbon_recom (pfam13408), DUF3500 (pfam12006), FepC (COG1120), FepD (COG0609), PRK06172 (SDR family oxidoreductase), DltE (COG3967), CHAT (pfam12770), GUN4 (pfam05419)