myRT

myRT report for GCA_000315585.1_ASM31558v1

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Seq: JH992890.1 Fischerella sp. PCC 9339 genomic scaffold PCC9339DRAFT_scaffold5.9, whole genome shotgun sequence (257338 bp)
Overview 1 RT 1: 53362-57814 bp 2 RT 2: 65747-74436 bp 3 RT 3: 124462-130398 bp 4 RT 4: 205032-209305 bp Neighborhood of RT #1 [53362, 57864] nucleoid_noc nucleoid_noc BcsQ RVT-GII McrA DUF5372 PinE Neighborhood of RT #2 [65747, 74843] ycf46 YhhI YhhI YhhI RVT_N RVT-GII RVT_N RVT-GII GIIM HNH RVT-GII GIIM HNHc ycf46 HsdM Neighborhood of RT #3 [124462, 130463] HTH_Tnp_4 DDE_Tnp_4 RVT_N RVT-GII RVT_N RVT-GII GIIM HNH FUR Neighborhood of RT #4 [205032, 209305] MdlB HNHc RVT-GII GIIM RVT_N Feature: gene Location: 53362-54288 bp Feature: domain Description: nucleoid_noc Location: 53449-53881 bp Feature: domain Description: nucleoid_noc Location: 53449-53881 bp Feature: domain Description: nucleoid_noc Location: 53929-54154 bp Feature: domain Description: nucleoid_noc Location: 53929-541 54 bp Feature: gene Location: 54288-55040 bp Feature: domain Description: BcsQ Location: 54291-55020 bp Feature: domain Description: BcsQ Location: 54291 -55020 bp Feature: gene Location: 55494-56699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55515-56073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5551 5-56073 bp Feature: domain Description: McrA Location: 56316-56649 bp Feature: domain Description: McrA Location: 5631 6-56649 bp Feature: gene Location: 56717-57169 bp Feature: domain Description: DUF5372 Location: 56738-56951 bp Feature: domain Description: DUF5372 Location: 56738-56951 bp Feature: gene Location: 57175-57864 bp Feature: domain Description: PinE Location: 57214-57814 bp Feature: domain Description: PinE Location: 5721 4-5781 4 bp Feature: gene Location: 65747-66841 bp Feature: domain Description: ycf46 Location: 66023-66830 bp Feature: domain Description: ycf46 Location: 66023-66830 bp Feature: gene Location: 67141-68271 bp Feature: domain Description: YhhI Location: 67222-67507 bp Feature: domain Description: YhhI Location: 67222-67507 bp Feature: domain Description: YhhI Location: 67573-67894 bp Feature: domain Description: YhhI Location: 67573-67894 bp Feature: domain Description: YhhI Location: 67987-68200 bp Feature: domain Description: YhhI Location: 67987-68200 bp Feature: gene Location: 69025-69582 bp Feature: domain Description: RVT_N Location: 69070-69313 bp Feature: domain Description: RVT_N Location: 69070-6931 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69364-69502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69364-69502 bp Feature: gene Location: 70121-71932 bp Feature: domain Description: RVT_N Location: 70157-70403 bp Feature: domain Description: RVT_N Location: 701 57-70403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70445-71129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70445-71 1 29 bp Feature: domain Description: GIIM Note: maturase Location: 71228-71462 bp Feature: domain Description: GIIM Note: maturase Location: 71 228-71 462 bp Feature: domain Description: HNH Note: nucleases Location: 71687-71822 bp Feature: domain Description: HNH Note: nucleases Location: 71 687-71 822 bp Feature: gene Location: 71925-73241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72027-72546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72027-72546 bp Feature: domain Description: GIIM Note: maturase Location: 72618-72852 bp Feature: domain Description: GIIM Note: maturase Location: 7261 8-72852 bp Feature: domain Description: HNHc Note: nucleases Location: 73050-73215 bp Feature: domain Description: HNHc Note: nucleases Location: 73050-7321 5 bp Feature: gene Location: 73335-73766 bp Feature: domain Description: ycf46 Location: 73353-73683 bp Feature: domain Description: ycf46 Location: 73353-73683 bp Feature: gene Location: 73950-74843 bp Feature: domain Description: HsdM Location: 74331-74436 bp Feature: domain Description: HsdM Location: 74331 -74436 bp Feature: gene Location: 124462-124611 bp Feature: gene Location: 124641-125285 bp Feature: domain Description: HTH_Tnp_4 Location: 124782-124926 bp Feature: domain Description: HTH_Tnp_4 Location: 1 24782-1 24926 bp Feature: domain Description: DDE_Tnp_4 Location: 124995-125277 bp Feature: domain Description: DDE_Tnp_4 Location: 1 24995-1 25277 bp Feature: gene Location: 125650-126492 bp Feature: domain Description: RVT_N Location: 125701-125944 bp Feature: domain Description: RVT_N Location: 1 25701 -1 25944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125986-126484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 25986-1 26484 bp Feature: gene Location: 127556-127792 bp Feature: gene Location: 127852-129687 bp Feature: domain Description: RVT_N Location: 127912-128158 bp Feature: domain Description: RVT_N Location: 1 2791 2-1 281 58 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128200-128884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 28200-1 28884 bp Feature: domain Description: GIIM Note: maturase Location: 128983-129217 bp Feature: domain Description: GIIM Note: maturase Location: 1 28983-1 2921 7 bp Feature: domain Description: HNH Note: nucleases Location: 129442-129577 bp Feature: domain Description: HNH Note: nucleases Location: 1 29442-1 29577 bp Feature: gene Location: 129846-130082 bp Feature: gene Location: 130254-130463 bp Feature: domain Description: FUR Location: 130296-130398 bp Feature: domain Description: FUR Location: 1 30296-1 30398 bp Feature: gene Location: 205032-206876 bp Feature: domain Description: MdlB Location: 205062-206862 bp Feature: domain Description: MdlB Location: 205062-206862 bp Feature: gene Location: 206980-207204 bp Feature: domain Description: HNHc Note: nucleases Location: 206998-207139 bp Feature: domain Description: HNHc Note: nucleases Location: 206998-2071 39 bp Feature: gene Location: 207377-208468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 207440-208118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 207440-2081 1 8 bp Feature: domain Description: GIIM Note: maturase Location: 208181-208403 bp Feature: domain Description: GIIM Note: maturase Location: 2081 81 -208403 bp Feature: gene Location: 208621-208857 bp Feature: domain Description: RVT_N Location: 208669-208831 bp Feature: domain Description: RVT_N Location: 208669-208831 bp Feature: gene Location: 209174-209305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nucleoid_noc (TIGR04285), BcsQ (COG1192), RVT-GII, McrA (COG4058), DUF5372 (pfam17342), PinE (COG1961), ycf46 (CHL00195), YhhI (COG5433), RVT_N (pfam13655), GIIM (pfam08388)
HNH (pfam01844), HNHc (smart00507), HsdM (COG0286), HTH_Tnp_4 (pfam13613), DDE_Tnp_4 (pfam13359), FUR (pfam01475), MdlB (COG1132)

Seq: JH992891.1 Fischerella sp. PCC 9339 genomic scaffold PCC9339DRAFT_scaffold4.8, whole genome shotgun sequence (190577 bp)
Overview 1 RT 1: 83946-89738 bp Neighborhood of RT #1 [83946, 89743] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR M48B_HtpX_like TIGR03985 Feature: gene Location: 83946-84221 bp Feature: domain Description: Cas2_I_II_III Location: 83955-84180 bp Feature: domain Description: Cas2 _I_II_III Location: 83955-84180 bp Feature: gene Location: 84748-85899 bp Feature: domain Description: Cas1_I-II-III Location: 84907-85861 bp Feature: domain Description: Cas1_I-II-III Location: 84907-85861 bp Feature: gene Location: 86001-86924 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 86208-86814 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 862 08-86814 bp Feature: gene Location: 87068-88102 bp Feature: domain Description: M48B_HtpX_like Location: 87239-88079 bp Feature: domain Description: M48B_HtpX_like Location: 872 39-88079 bp Feature: gene Location: 88271-89743 bp Feature: domain Description: TIGR03985 Location: 89000-89738 bp Feature: domain Description: TIGR03985 Location: 89000-89738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR, M48B_HtpX_like (cd07339), TIGR03985 (CRISPR-associated protein, TIGR03985 family)

Seq: JH992892.1 Fischerella sp. PCC 9339 genomic scaffold PCC9339DRAFT_scaffold3.7, whole genome shotgun sequence (427165 bp)
Overview 1 RT 1: 157016-163142 bp 2 RT 2: 328426-333541 bp 3 RT 3: 402532-407401 bp Neighborhood of RT #1 [157016, 163142] SMC_prok_A SMC_prok_A RVT_N RVT-GII GIIM HTH_Tnp_4 DDE_Tnp_4 Neighborhood of RT #2 [328426, 333576] Nterm_IS4 GIIM HNH RVT-GII BaeS KOG4768 Neighborhood of RT #3 [402532, 407613] XdhC XdhC XdhC GT_2_like_f RVT_N RVT-GII GIIM HNHc Tnp_DNA_bind Feature: gene Location: 157016-157207 bp Feature: gene Location: 157482-159902 bp Feature: domain Description: SMC_prok_A Location: 157626-158064 bp Feature: domain Description: SMC_prok_A Location: 157626-158064 bp Feature: domain Description: SMC_prok_A Location: 158181-158424 bp Feature: domain Description: SMC_prok_A Location: 158181-158424 bp Feature: gene Location: 160539-161906 bp Feature: domain Description: RVT_N Location: 160602-160848 bp Feature: domain Description: RVT_N Location: 160602-160848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160890-161562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160890-161562 bp Feature: domain Description: GIIM Note: maturase Location: 161664-161892 bp Feature: domain Description: GIIM Note: maturase Location: 161664-161892 bp Feature: gene Location: 162095-162916 bp Feature: domain Description: HTH_Tnp_4 Location: 162236-162380 bp Feature: domain Description: HTH_Tnp_4 Location: 16223 6-1623 80 bp Feature: domain Description: DDE_Tnp_4 Location: 162449-162863 bp Feature: domain Description: DDE_Tnp_4 Location: 162449-162863 bp Feature: gene Location: 162897-163142 bp Feature: gene Location: 328426-329031 bp Feature: domain Description: Nterm_IS4 Location: 328486-328771 bp Feature: domain Description: Nterm_IS4 Location: 3 28486-3 28771 bp Feature: gene Location: 329140-329832 bp Feature: domain Description: GIIM Note: maturase Location: 329206-329401 bp Feature: domain Description: GIIM Note: maturase Location: 3 29206-3 29401 bp Feature: domain Description: HNH Note: nucleases Location: 329653-329791 bp Feature: domain Description: HNH Note: nucleases Location: 3 29653 -3 29791 bp Feature: gene Location: 330097-330717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330100-330685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 0100-3 3 0685 bp Feature: gene Location: 330987-332186 bp Feature: domain Description: BaeS Location: 331656-332178 bp Feature: domain Description: BaeS Location: 3 3 1656-3 3 2178 bp Feature: gene Location: 332935-333576 bp Feature: domain Description: KOG4768 Location: 332944-333541 bp Feature: domain Description: KOG4768 Location: 3 3 2944-3 3 3 541 bp Feature: gene Location: 402532-403692 bp Feature: domain Description: XdhC Location: 402568-402871 bp Feature: domain Description: XdhC Location: 402568-402871 bp Feature: domain Description: XdhC Location: 402883-403018 bp Feature: domain Description: XdhC Location: 402883 -403 018 bp Feature: domain Description: XdhC Location: 403111-403651 bp Feature: domain Description: XdhC Location: 403 111-403 651 bp Feature: gene Location: 403671-404255 bp Feature: domain Description: GT_2_like_f Location: 403683-404244 bp Feature: domain Description: GT_2_like_f Location: 403 683 -404244 bp Feature: gene Location: 404408-405961 bp Feature: domain Description: RVT_N Location: 404414-404546 bp Feature: domain Description: RVT_N Location: 404414-404546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404600-405278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404600-405278 bp Feature: domain Description: GIIM Note: maturase Location: 405341-405563 bp Feature: domain Description: GIIM Note: maturase Location: 4053 41-405563 bp Feature: domain Description: HNHc Note: nucleases Location: 405797-405938 bp Feature: domain Description: HNHc Note: nucleases Location: 405797-40593 8 bp Feature: gene Location: 406459-406614 bp Feature: gene Location: 407224-407613 bp Feature: domain Description: Tnp_DNA_bind Location: 407230-407401 bp Feature: domain Description: Tnp_DNA_bind Location: 40723 0-407401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMC_prok_A (TIGR02169), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_Tnp_4 (pfam13613), DDE_Tnp_4 (pfam13359), Nterm_IS4 (pfam13006), HNH (pfam01844), BaeS (COG0642), KOG4768 (KOG4768, Mitochondrial mRNA maturase )
XdhC (COG1975), GT_2_like_f (cd04182), HNHc (smart00507), Tnp_DNA_bind (pfam14706)