myRT

myRT report for GCA_000316015.1_2009K-0807v1

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Seq: AMRS01000003.1 Salmonella enterica subsp. enterica serovar Mbandaka str. 2009K-0807 contig00003, whole genome shotgun sequence (358018 bp)
Overview 1 RT 1: 167225-170739 bp Neighborhood of RT #1 [167225, 170739] DUF4156 DUF2188 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 167225-167590 bp Feature: domain Description: DUF4156 Location: 167306-167582 bp Feature: domain Description: DUF41 56 Location: 1 67306-1 67582 bp Feature: gene Location: 167933-168160 bp Feature: domain Description: DUF2188 Location: 167948-168125 bp Feature: domain Description: DUF21 88 Location: 1 67948-1 681 25 bp Feature: gene Location: 168309-169982 bp Feature: domain Description: RVT_N Location: 168372-168606 bp Feature: domain Description: RVT_N Location: 1 68372-1 68606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168660-169305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 68660-1 69305 bp Feature: domain Description: GIIM Note: maturase Location: 169359-169590 bp Feature: domain Description: GIIM Note: maturase Location: 1 69359-1 69590 bp Feature: domain Description: HNHc Note: nucleases Location: 169800-169956 bp Feature: domain Description: HNHc Note: nucleases Location: 1 69800-1 69956 bp Feature: gene Location: 170120-170356 bp Feature: gene Location: 170413-170739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4156 (pfam13698), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AMRS01000006.1 Salmonella enterica subsp. enterica serovar Mbandaka str. 2009K-0807 contig00006, whole genome shotgun sequence (240846 bp)
Overview 1 RT 1: 214297-219591 bp Neighborhood of RT #1 [214297, 219614] 5 RVT-UG11 int Phage_CI_repr Phage_CI_C Feature: gene Location: 214297-215997 bp Feature: domain Description: 5 Location: 215521-215815 bp Feature: domain Description: 5 Location: 2 1552 1-2 15815 bp Feature: gene Location: 216127-216294 bp Feature: gene Location: 216904-217668 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 217027-217480 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 1702 7-2 17480 bp Feature: gene Location: 217877-218962 bp Feature: domain Description: int Location: 217880-218882 bp Feature: domain Description: int Location: 2 17880-2 18882 bp Feature: gene Location: 218985-219614 bp Feature: domain Description: Phage_CI_repr Location: 219069-219255 bp Feature: domain Description: Phage_CI_repr Location: 2 19069-2 192 55 bp Feature: domain Description: Phage_CI_C Location: 219297-219591 bp Feature: domain Description: Phage_CI_C Location: 2 192 97-2 19591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452)

Seq: AMRS01000032.1 Salmonella enterica subsp. enterica serovar Mbandaka str. 2009K-0807 contig00032, whole genome shotgun sequence (8498 bp)
Overview 1 RT 1: 2890-5651 bp Neighborhood of RT #1 [2890, 5731] InsE RVT-Retrons TIR-like Feature: gene Location: 2890-3192 bp Feature: domain Description: InsE Location: 2899-3181 bp Feature: domain Description: InsE Location: 2899-3 181 bp Feature: gene Location: 3624-3851 bp Feature: gene Location: 3882-4841 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4062-4584 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4062-4584 bp Feature: gene Location: 4870-5268 bp Feature: gene Location: 5360-5731 bp Feature: domain Description: TIR-like Location: 5366-5651 bp Feature: domain Description: TIR-like Location: 53 66-5651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-Retrons, TIR-like (pfam10137)