myRT

myRT report for GCA_000316115.1_ASM31611v1

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Seq: JH993793.1 Leptolyngbya sp. PCC 7375 genomic scaffold Lepto7375DRAFT_LPA.1, whole genome shotgun sequence (696676 bp)
Overview 1 RT 1: 259464-263923 bp Neighborhood of RT #1 [259464, 263923] RVT-GII GIIM Feature: gene Location: 259464-259769 bp Feature: gene Location: 259957-260466 bp Feature: gene Location: 260463-261800 bp Ori: EKU96243.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260742-261363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260742-261 363 bp Feature: domain Description: GIIM Note: maturase Location: 261408-261612 bp Feature: domain Description: GIIM Note: maturase Location: 261 408-261 61 2 bp Feature: gene Location: 262011-262937 bp Feature: gene Location: 263117-263923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JH993797.1 Leptolyngbya sp. PCC 7375 genomic scaffold Lepto7375DRAFT_LPA.5, whole genome shotgun sequence (8157108 bp)
Overview 1 RT 1: 2468176-2476524 bp Neighborhood of RT #1 [2468176, 2476526] T3SC_I_like BglX PRK15098 Exop_C RVT-CRISPR Cas1_I-II-III Cas2_I_II_III TIGR03985 Feature: gene Location: 2468176-2468706 bp Ori: EKV01086.1 Feature: domain Description: T3SC_I_like Location: 2468329-2468626 bp Feature: domain Description: T3SC_I_like Location: 2 46832 9-2 46862 6 bp Feature: gene Location: 2468891-2471425 bp Ori: EKV01087.1 Feature: domain Description: BglX Location: 2469113-2470400 bp Feature: domain Description: BglX Location: 2 469113-2 470400 bp Feature: domain Description: PRK15098 Location: 2470457-2470892 bp Feature: domain Description: PRK15098 Location: 2 470457-2 470892 bp Feature: domain Description: Exop_C Location: 2470949-2471411 bp Feature: domain Description: Exop_C Location: 2 470949-2 471411 bp Feature: gene Location: 2471428-2473290 bp Ori: EKV01088.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2471431-2472022 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 471431-2 472 02 2 bp Feature: domain Description: Cas1_I-II-III Location: 2472295-2473252 bp Feature: domain Description: Cas1_I-II-III Location: 2 472 2 95-2 4732 52 bp Feature: gene Location: 2473290-2473568 bp Ori: EKV01089.1 Feature: domain Description: Cas2_I_II_III Location: 2473299-2473530 bp Feature: domain Description: Cas2 _I_II_III Location: 2 4732 99-2 473530 bp Feature: gene Location: 2475150-2476526 bp Ori: EKV01090.1 Feature: domain Description: TIGR03985 Location: 2475777-2476524 bp Feature: domain Description: TIGR03985 Location: 2 475777-2 47652 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T3SC_I_like, BglX (COG1472), PRK15098 (beta-glucosidase BglX), Exop_C (pfam18559), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), TIGR03985 (CRISPR-associated protein, TIGR03985 family)

Seq: JH993796.1 Leptolyngbya sp. PCC 7375 genomic scaffold Lepto7375DRAFT_LPA.4, whole genome shotgun sequence (156631 bp)
Overview 1 RT 1: 67029-72548 bp Neighborhood of RT #1 [67029, 72548] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 67029-67166 bp Feature: gene Location: 67661-68413 bp Feature: gene Location: 68893-70569 bp Ori: EKU97139.1 Feature: domain Description: RVT_N Location: 68935-69181 bp Feature: domain Description: RVT_N Location: 6893 5-69181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69229-69868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69229-69868 bp Feature: domain Description: GIIM Note: maturase Location: 69940-70174 bp Feature: domain Description: GIIM Note: maturase Location: 69940-70174 bp Feature: domain Description: HNHc Note: nucleases Location: 70384-70552 bp Feature: domain Description: HNHc Note: nucleases Location: 703 84-70552 bp Feature: gene Location: 71685-72068 bp Feature: gene Location: 72309-72548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JH993795.1 Leptolyngbya sp. PCC 7375 genomic scaffold Lepto7375DRAFT_LPA.3, whole genome shotgun sequence (344561 bp)
Overview 1 RT 1: 131050-136835 bp 2 RT 2: 228917-240579 bp 3 RT 3: 322326-331484 bp Neighborhood of RT #1 [131050, 136835] YfmG Avd_like RVT-DGRs YfmG Neighborhood of RT #2 [228917, 240653] NB-ARC Nudix_Hydrolase_21 TPR_12 TPR_12 TPR_10 RVT-GII GIIM NagC NagC NagC NACHT YjbI Neighborhood of RT #3 [322326, 331504] IF2_N YfmG Avd_like RVT-DGRs YfmG WD40 WD40 WD40 WD40 WD40 WD40 YfmG Feature: gene Location: 131050-131895 bp Ori: EKU96833.1 Feature: domain Description: YfmG Location: 131122-131878 bp Feature: domain Description: YfmG Location: 131122-131878 bp Feature: gene Location: 132084-132488 bp Ori: EKU96834.1 Feature: domain Description: Avd_like Location: 132111-132417 bp Feature: domain Description: Avd_like Location: 132111-1324 17 bp Feature: gene Location: 132485-133576 bp Ori: EKU96835.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 132695-133334 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 132695-133334 bp Feature: gene Location: 133977-134786 bp Ori: EKU96836.1 Feature: domain Description: YfmG Location: 134007-134772 bp Feature: domain Description: YfmG Location: 134 007-134 772 bp Feature: gene Location: 135036-136835 bp Feature: gene Location: 228917-231094 bp Ori: EKU96908.1 Feature: domain Description: NB-ARC Location: 229268-229856 bp Feature: domain Description: NB-ARC Location: 229268-229856 bp Feature: domain Description: Nudix_Hydrolase_21 Location: 230054-230282 bp Feature: domain Description: Nudix_Hydrolase_21 Location: 230054 -230282 bp Feature: domain Description: TPR_12 Location: 230444-230633 bp Feature: domain Description: TPR_12 Location: 2304 4 4 -230633 bp Feature: domain Description: TPR_12 Location: 230675-230885 bp Feature: domain Description: TPR_12 Location: 230675-230885 bp Feature: domain Description: TPR_10 Location: 230927-231032 bp Feature: domain Description: TPR_10 Location: 230927-231032 bp Feature: gene Location: 231098-231649 bp Feature: gene Location: 232159-233538 bp Ori: EKU96910.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232492-233176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2324 92-233176 bp Feature: domain Description: GIIM Note: maturase Location: 233263-233464 bp Feature: domain Description: GIIM Note: maturase Location: 233263-2334 64 bp Feature: gene Location: 233894-237913 bp Ori: EKU96911.1 Feature: domain Description: NagC Location: 235574-235637 bp Feature: domain Description: NagC Location: 235574 -235637 bp Feature: domain Description: NagC Location: 235931-236045 bp Feature: domain Description: NagC Location: 235931-23604 5 bp Feature: domain Description: NagC Location: 236474-236657 bp Feature: domain Description: NagC Location: 2364 74 -236657 bp Feature: gene Location: 237948-240653 bp Ori: EKU96912.1 Feature: domain Description: NACHT Location: 238743-239064 bp Feature: domain Description: NACHT Location: 23874 3-239064 bp Feature: domain Description: YjbI Location: 240225-240579 bp Feature: domain Description: YjbI Location: 24 0225-24 0579 bp Feature: gene Location: 322326-323528 bp Ori: EKU96981.1 Feature: domain Description: IF2_N Location: 322338-322476 bp Feature: domain Description: IF2_N Location: 322338-3224 76 bp Feature: domain Description: YfmG Location: 322788-323508 bp Feature: domain Description: YfmG Location: 322788-323508 bp Feature: gene Location: 323991-324377 bp Ori: EKU96982.1 Feature: domain Description: Avd_like Location: 324012-324318 bp Feature: domain Description: Avd_like Location: 324 012-324 318 bp Feature: gene Location: 324374-325507 bp Ori: EKU96983.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 324584-325223 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 324 584 -325223 bp Feature: gene Location: 326899-327711 bp Ori: EKU96984.1 Feature: domain Description: YfmG Location: 326980-327694 bp Feature: domain Description: YfmG Location: 326980-327694 bp Feature: gene Location: 327761-331504 bp Ori: EKU96985.1 Feature: domain Description: WD40 Location: 329810-329903 bp Feature: domain Description: WD4 0 Location: 329810-329903 bp Feature: domain Description: WD40 Location: 329933-330029 bp Feature: domain Description: WD4 0 Location: 329933-330029 bp Feature: domain Description: WD40 Location: 330041-330155 bp Feature: domain Description: WD4 0 Location: 33004 1-330155 bp Feature: domain Description: WD40 Location: 330164-330281 bp Feature: domain Description: WD4 0 Location: 330164 -330281 bp Feature: domain Description: WD40 Location: 330293-330407 bp Feature: domain Description: WD4 0 Location: 330293-3304 07 bp Feature: domain Description: WD40 Location: 330419-330533 bp Feature: domain Description: WD4 0 Location: 3304 19-330533 bp Feature: domain Description: YfmG Location: 330737-331484 bp Feature: domain Description: YfmG Location: 330737-3314 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, NB-ARC (pfam00931), Nudix_Hydrolase_21 (cd04680), TPR_12 (pfam13424), TPR_10 (pfam13374), RVT-GII, GIIM (pfam08388), NagC (COG1940)
NACHT (pfam05729), YjbI (COG2346), IF2_N (pfam04760), WD40 (smart00320)