myRT

myRT report for GCA_000316285.1_Paenibacillus_sonchi_X19-5T

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Seq: AJTY01000004.1 Paenibacillus sonchi X19-5 S5_contig00004, whole genome shotgun sequence (23949 bp)
Overview 1 RT 1: 9504-14275 bp Neighborhood of RT #1 [9504, 14460] SLH SLH Aes PRK10659 RVT-GII KOG1515 KOG1515 AcrR Feature: gene Location: 9504-11642 bp Feature: domain Description: SLH Location: 9741-9870 bp Feature: domain Description: SLH Location: 9741 -9870 bp Feature: domain Description: SLH Location: 9966-10080 bp Feature: domain Description: SLH Location: 9966-1 0080 bp Feature: domain Description: Aes Location: 10698-11580 bp Feature: domain Description: Aes Location: 1 0698-1 1 580 bp Feature: gene Location: 11831-12103 bp Feature: domain Description: PRK10659 Location: 11858-11993 bp Feature: domain Description: PRK1 0659 Location: 1 1 858-1 1 993 bp Feature: gene Location: 12449-12760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12452-12584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2452-1 2584 bp Feature: gene Location: 12880-13866 bp Feature: domain Description: KOG1515 Location: 13126-13531 bp Feature: domain Description: KOG1 51 5 Location: 1 31 26-1 3531 bp Feature: domain Description: KOG1515 Location: 13591-13741 bp Feature: domain Description: KOG1 51 5 Location: 1 3591 -1 3741 bp Feature: gene Location: 13954-14460 bp Feature: domain Description: AcrR Location: 13984-14275 bp Feature: domain Description: AcrR Location: 1 3984-1 4275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLH (pfam00395), Aes (COG0657), PRK10659 (acetate uptake transporter), RVT-GII, KOG1515 (KOG1515, Arylacetamide deacetylase ), AcrR (COG1309)

Seq: AJTY01000037.1 Paenibacillus sonchi X19-5 S5_contig00038, whole genome shotgun sequence (583 bp)
Overview 1 RT 1: 92-518 bp Neighborhood of RT #1 [92, 580] RVT-GII GIIM Feature: gene Location: 92-580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98-221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98-2 2 1 bp Feature: domain Description: GIIM Note: maturase Location: 344-518 bp Feature: domain Description: GIIM Note: maturase Location: 344-518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AJTY01000063.1 Paenibacillus sonchi X19-5 S5_contig00064, whole genome shotgun sequence (1942 bp)
Overview 1 RT 1: 301-1480 bp Neighborhood of RT #1 [301, 1869] RVT-GII Feature: gene Location: 301-456 bp Feature: gene Location: 535-1869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 790-1480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 790-1480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJTY01000106.1 Paenibacillus sonchi X19-5 S5_contig00107, whole genome shotgun sequence (2823 bp)
Overview 1 RT 1: 3-2820 bp Neighborhood of RT #1 [3, 2820] RVT-GII GIIM Feature: gene Location: 3-356 bp Feature: gene Location: 538-738 bp Feature: gene Location: 812-2212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1124-1751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1124 -1751 bp Feature: domain Description: GIIM Note: maturase Location: 1808-2036 bp Feature: domain Description: GIIM Note: maturase Location: 1808-2036 bp Feature: gene Location: 2299-2820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AJTY01000136.1 Paenibacillus sonchi X19-5 S5_contig00138, whole genome shotgun sequence (978 bp)
Overview 1 RT 1: 173-977 bp Neighborhood of RT #1 [173, 976] RVT-GII Feature: gene Location: 173-976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473-977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473-977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJTY01000718.1 Paenibacillus sonchi X19-5 S5_contig00741, whole genome shotgun sequence (29607 bp)
Overview 1 RT 1: 25715-29606 bp Neighborhood of RT #1 [25715, 29606] LysR SerA RVT-GII Feature: gene Location: 25715-26599 bp Feature: domain Description: LysR Location: 25733-26576 bp Feature: domain Description: LysR Location: 25733-26 576 bp Feature: gene Location: 26673-27728 bp Feature: domain Description: SerA Location: 26784-27711 bp Feature: domain Description: SerA Location: 26 784-27711 bp Feature: gene Location: 27917-29035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28217-28850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28217-28850 bp Feature: gene Location: 29403-29606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), SerA (COG0111), RVT-GII