myRT

myRT report for GCA_000316905.2_ASM31690v2

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Seq: KB000496.1 Escherichia coli 96.0428 genomic scaffold gec960428.contig.1, whole genome shotgun sequence (8275 bp)
Overview 1 RT 1: 1085-3960 bp Neighborhood of RT #1 [1085, 3960] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 1085-2809 bp Feature: RT Description: RVT_N Location: 1142-1379 bp Feature: RT Description: RVT_N Location: 1 1 42-1 379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1430-2078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 430-2078 bp Feature: domain Description: YkfC Location: 2210-2366 bp Feature: domain Description: YkfC Location: 221 0-2366 bp Feature: domain Description: HNHc Note: nucleases Location: 2594-2753 bp Feature: domain Description: HNHc Note: nucleases Location: 2594-2753 bp Feature: gene Location: 2886-3788 bp Feature: domain Description: DUF1281 Location: 2955-3483 bp Feature: domain Description: DUF1 281 Location: 2955-3483 bp Feature: domain Description: DUF1281_C Location: 3489-3717 bp Feature: domain Description: DUF1 281 _C Location: 3489-371 7 bp Feature: gene Location: 3739-3960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: KB000743.1 Escherichia coli 96.0428 genomic scaffold gec960428.contig.336, whole genome shotgun sequence (181239 bp)
Overview 1 RT 1: 119326-123304 bp Neighborhood of RT #1 [119326, 124206] RVT-Retrons Phage_GPA Feature: gene Location: 119326-119457 bp Feature: gene Location: 119519-119956 bp Feature: gene Location: 120081-121031 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 120261-120804 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 02 61-12 0804 bp Feature: gene Location: 121354-121509 bp Feature: gene Location: 121918-124206 bp Feature: domain Description: Phage_GPA Location: 122317-123304 bp Feature: domain Description: Phage_GPA Location: 12 2 317-12 3304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Phage_GPA (pfam05840)