myRT

myRT report for GCA_000317185.3_M1_v2.0

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Seq: ANIR02000001.1 Pseudomonas sp. M1 PM1contig_001, whole genome shotgun sequence (210792 bp)
Overview 1 RT 1: 50189-58380 bp Neighborhood of RT #1 [50189, 58397] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 50189-51481 bp Ori: ETM69038.1 Feature: domain Description: PRK10770 Location: 50279-51473 bp Feature: domain Description: PRK1 0770 Location: 50279-51 473 bp Feature: gene Location: 51462-54263 bp Ori: ETM69039.1 Feature: domain Description: LptD Location: 51831-54249 bp Feature: domain Description: LptD Location: 51 831 -54249 bp Feature: gene Location: 54396-56108 bp Ori: ETM69040.1 Feature: domain Description: RVT_N Location: 54453-54696 bp Feature: domain Description: RVT_N Location: 54453-54696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54741-55377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54741 -55377 bp Feature: domain Description: YkfC Location: 55587-55737 bp Feature: domain Description: YkfC Location: 55587-55737 bp Feature: domain Description: HNH Note: nucleases Location: 55914-56052 bp Feature: domain Description: HNH Note: nucleases Location: 5591 4-56052 bp Feature: gene Location: 56949-57095 bp Feature: gene Location: 57381-58397 bp Ori: ETM69042.1 Feature: domain Description: COG3178 Location: 57387-58380 bp Feature: domain Description: COG31 78 Location: 57387-58380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: ANIR02000002.1 Pseudomonas sp. M1 PM1contig_002, whole genome shotgun sequence (4881728 bp)
Overview 1 RT 1: 3739578-3742653 bp 2 RT 2: 4282169-4285867 bp Neighborhood of RT #1 [3739578, 3742667] RVT-DGRs Avd_like DUF1566 Neighborhood of RT #2 [4282169, 4285881] RVT-UG17 SLATT_5 HEPN_RiboL-PSP Feature: gene Location: 3739578-3739979 bp Feature: gene Location: 3739990-3740235 bp Feature: gene Location: 3740421-3741431 bp Ori: ETM67999.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3740514-3741198 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3740514-3741198 bp Feature: gene Location: 3741786-3742142 bp Ori: ETM68000.1 Feature: domain Description: Avd_like Location: 3741813-3742119 bp Feature: domain Description: Avd_like Location: 3741813-3742 119 bp Feature: gene Location: 3742200-3742667 bp Ori: ETM68001.1 Feature: domain Description: DUF1566 Location: 3742494-3742653 bp Feature: domain Description: DUF1566 Location: 3742 494-3742 653 bp Feature: gene Location: 4282169-4282510 bp Feature: gene Location: 4282538-4282711 bp Feature: gene Location: 4283147-4284511 bp Ori: ETM68510.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4283375-4283978 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 42 83375-42 83978 bp Feature: gene Location: 4284508-4285062 bp Ori: ETM68511.1 Feature: domain Description: SLATT_5 Location: 4284514-4285033 bp Feature: domain Description: SLATT_5 Location: 42 84514-42 85033 bp Feature: gene Location: 4285339-4285881 bp Ori: ETM68512.1 Feature: domain Description: HEPN_RiboL-PSP Location: 4285378-4285867 bp Feature: domain Description: HEPN_RiboL-PSP Location: 42 85378-42 85867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603), RVT-UG17, SLATT_5 (pfam18160), HEPN_RiboL-PSP (pfam18735)