myRT

myRT report for GCA_000317205.1_FisPCC7414_1.0

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Seq: AJLK01000008.1 Fischerella muscicola PCC 7414 contig00008, whole genome shotgun sequence (43021 bp)
Overview 1 RT 1: 37689-42761 bp Neighborhood of RT #1 [37689, 42761] PRK13654 RVT-Retrons entF Feature: gene Location: 37689-38393 bp Feature: gene Location: 38514-39590 bp Feature: domain Description: PRK13654 Location: 38547-39585 bp Feature: domain Description: PRK1 3654 Location: 38547-39585 bp Feature: gene Location: 39778-40596 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39787-40333 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39787-40333 bp Feature: gene Location: 40939-42522 bp Feature: domain Description: entF Location: 40942-42508 bp Feature: domain Description: entF Location: 40942-42508 bp Feature: gene Location: 42591-42761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13654 (magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional), RVT-Retrons, entF (PRK10252)

Seq: AJLK01000113.1 Fischerella muscicola PCC 7414 contig00113, whole genome shotgun sequence (62439 bp)
Overview 1 RT 1: 48676-52991 bp Neighborhood of RT #1 [48676, 53083] COG4249 YfmG Avd_like RVT-DGRs Acetyltransf_1 Feature: gene Location: 48676-50571 bp Feature: domain Description: COG4249 Location: 48682-49546 bp Feature: domain Description: COG42 49 Location: 48682 -49546 bp Feature: domain Description: YfmG Location: 49714-50548 bp Feature: domain Description: YfmG Location: 49714-50548 bp Feature: gene Location: 50764-51105 bp Feature: domain Description: Avd_like Location: 50782-51088 bp Feature: domain Description: Avd_like Location: 50782 -51088 bp Feature: gene Location: 51107-52165 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51314-51959 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51314-51959 bp Feature: gene Location: 52104-52478 bp Feature: gene Location: 52571-53083 bp Feature: domain Description: Acetyltransf_1 Location: 52679-52991 bp Feature: domain Description: Acetyltransf_1 Location: 52 679-52 991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4249 (Uncharacterized protein, contains caspase domain ), YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, Acetyltransf_1 (pfam00583)

Seq: AJLK01000155.1 Fischerella muscicola PCC 7414 contig00155, whole genome shotgun sequence (7939 bp)
Overview 1 RT 1: 459-7850 bp Neighborhood of RT #1 [459, 7873] RVT-CRISPR cas1 DUF4384 TPR_12 TPR_12 TPR_12 TPR_10 TPR_12 TPR_12 TPR_12 TPR_10 CHAT Feature: gene Location: 459-722 bp Feature: gene Location: 941-2959 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1130-1736 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 113 0-173 6 bp Feature: domain Description: cas1 Location: 1952-2930 bp Feature: domain Description: cas1 Location: 1952-293 0 bp Feature: gene Location: 3262-4014 bp Feature: domain Description: DUF4384 Location: 3640-3871 bp Feature: domain Description: DUF43 84 Location: 3 640-3 871 bp Feature: gene Location: 4136-7873 bp Feature: domain Description: TPR_12 Location: 4283-4499 bp Feature: domain Description: TPR_12 Location: 4283 -4499 bp Feature: domain Description: TPR_12 Location: 4529-4757 bp Feature: domain Description: TPR_12 Location: 4529-4757 bp Feature: domain Description: TPR_12 Location: 4784-5009 bp Feature: domain Description: TPR_12 Location: 4784-5009 bp Feature: domain Description: TPR_10 Location: 5036-5159 bp Feature: domain Description: TPR_10 Location: 503 6-5159 bp Feature: domain Description: TPR_12 Location: 5159-5387 bp Feature: domain Description: TPR_12 Location: 5159-53 87 bp Feature: domain Description: TPR_12 Location: 5411-5624 bp Feature: domain Description: TPR_12 Location: 5411-5624 bp Feature: domain Description: TPR_12 Location: 5666-5885 bp Feature: domain Description: TPR_12 Location: 5666-5885 bp Feature: domain Description: TPR_10 Location: 5918-5981 bp Feature: domain Description: TPR_10 Location: 5918-5981 bp Feature: domain Description: CHAT Location: 6755-7850 bp Feature: domain Description: CHAT Location: 6755-7850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, cas1 (TIGR00287), DUF4384 (pfam14326), TPR_12 (pfam13424), TPR_10 (pfam13374), CHAT (pfam12770)

Seq: AJLK01000212.1 Fischerella muscicola PCC 7414 contig00212, whole genome shotgun sequence (2333 bp)
Overview 1 RT 1: 97-1750 bp Neighborhood of RT #1 [97, 1851] RVT_N RVT-GII GIIM HNH Feature: gene Location: 97-1851 bp Feature: domain Description: RVT_N Location: 145-385 bp Feature: domain Description: RVT_N Location: 14 5-385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 439-1078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 39-1078 bp Feature: domain Description: GIIM Note: maturase Location: 1153-1384 bp Feature: domain Description: GIIM Note: maturase Location: 1153-1384 bp Feature: domain Description: HNH Note: nucleases Location: 1615-1750 bp Feature: domain Description: HNH Note: nucleases Location: 1615-1750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)