myRT

myRT report for GCA_000317245.1_FisPCC73103_1.0

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Seq: AJLJ01000005.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00005, whole genome shotgun sequence (1864 bp)
Overview 1 RT 1: 600-1767 bp Neighborhood of RT #1 [600, 1862] RVT_N RVT-GII RVT-GII GIIM Feature: gene Location: 600-1862 bp Feature: domain Description: RVT_N Location: 630-864 bp Feature: domain Description: RVT_N Location: 630-864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 927-1353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 927-1 353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1353-1521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 353-1 521 bp Feature: domain Description: GIIM Note: maturase Location: 1584-1767 bp Feature: domain Description: GIIM Note: maturase Location: 1 584-1 767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: AJLJ01000101.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00105, whole genome shotgun sequence (796 bp)
Overview 1 RT 1: 2-608 bp Neighborhood of RT #1 [2, 793] RVT-GII GIIM Feature: gene Location: 2-793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-2 72 bp Feature: domain Description: GIIM Note: maturase Location: 377-608 bp Feature: domain Description: GIIM Note: maturase Location: 377-608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AJLJ01000119.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00123, whole genome shotgun sequence (840 bp)
Overview 1 RT 1: 1-577 bp Neighborhood of RT #1 [1, 576] RVT_N RVT-GII Feature: gene Location: 1-576 bp Feature: domain Description: RVT_N Location: 136-376 bp Feature: domain Description: RVT_N Location: 13 6-3 76 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430-577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 0-577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: AJLJ01000121.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00125, whole genome shotgun sequence (272 bp)
Overview 1 RT 1: 1-166 bp Neighborhood of RT #1 [1, 270] RVT-GII Feature: gene Location: 1-270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJLJ01000148.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00154, whole genome shotgun sequence (2032 bp)
Overview 1 RT 1: 220-1812 bp Neighborhood of RT #1 [220, 1812] RVT-GII GIIM Feature: gene Location: 220-1524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 511-1138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 11-1138 bp Feature: domain Description: GIIM Note: maturase Location: 1216-1417 bp Feature: domain Description: GIIM Note: maturase Location: 1216-1417 bp Feature: gene Location: 1492-1812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AJLJ01000149.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00155, whole genome shotgun sequence (705 bp)
Overview 1 RT 1: 2-701 bp Neighborhood of RT #1 [2, 703] RVT-GII GIIM McrA Feature: gene Location: 2-703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-149 bp Feature: domain Description: GIIM Note: maturase Location: 206-386 bp Feature: domain Description: GIIM Note: maturase Location: 206 -386 bp Feature: domain Description: McrA Location: 386-701 bp Feature: domain Description: McrA Location: 386 -701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: AJLJ01000208.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00216, whole genome shotgun sequence (10045 bp)
Overview 1 RT 1: 6362-10021 bp Neighborhood of RT #1 [6362, 10044] AarF RVT-GII GIIM McrA Feature: gene Location: 6362-8074 bp Feature: domain Description: AarF Location: 6401-7895 bp Feature: domain Description: AarF Location: 6401-7 895 bp Feature: gene Location: 8801-8941 bp Feature: gene Location: 9112-10044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9115-9280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9115-9280 bp Feature: domain Description: GIIM Note: maturase Location: 9382-9613 bp Feature: domain Description: GIIM Note: maturase Location: 9382-9613 bp Feature: domain Description: McrA Location: 9688-10021 bp Feature: domain Description: McrA Location: 9688-10021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AarF (COG0661), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: AJLJ01000209.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00217, whole genome shotgun sequence (644 bp)
Overview 1 RT 1: 1-643 bp Neighborhood of RT #1 [1, 642] RVT-DGRs Feature: gene Location: 1-642 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 151-643 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 151-643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: AJLJ01000262.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00271, whole genome shotgun sequence (26338 bp)
Overview 1 RT 1: 1870-8438 bp Neighborhood of RT #1 [1870, 8542] MUG113 RVT-GII GIIM McrA PinE Zn_ribbon_recom RVT-GII DUF5372 Zn_ribbon_recom HTH_17 Feature: gene Location: 1870-2163 bp Feature: gene Location: 2402-2842 bp Feature: domain Description: MUG113 Location: 2456-2663 bp Feature: domain Description: MUG113 Location: 2456-2663 bp Feature: gene Location: 2942-4126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2951-3395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29 51-339 5 bp Feature: domain Description: GIIM Note: maturase Location: 3497-3725 bp Feature: domain Description: GIIM Note: maturase Location: 349 7-3725 bp Feature: domain Description: McrA Location: 3791-4061 bp Feature: domain Description: McrA Location: 379 1-4061 bp Feature: gene Location: 4186-4488 bp Feature: gene Location: 4501-6066 bp Feature: domain Description: PinE Location: 4543-5215 bp Feature: domain Description: PinE Location: 4543-5215 bp Feature: domain Description: Zn_ribbon_recom Location: 5485-5644 bp Feature: domain Description: Zn_ribbon_recom Location: 5485-5644 bp Feature: gene Location: 6140-6454 bp Feature: gene Location: 6566-6763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6569-6761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6569 -6761 bp Feature: gene Location: 6799-7254 bp Feature: domain Description: DUF5372 Location: 6820-7033 bp Feature: domain Description: DUF5372 Location: 6820-7033 bp Feature: gene Location: 7364-8542 bp Feature: domain Description: Zn_ribbon_recom Location: 7451-7628 bp Feature: domain Description: Zn_ribbon_recom Location: 7451-7628 bp Feature: domain Description: HTH_17 Location: 8351-8438 bp Feature: domain Description: HTH_17 Location: 8351-8438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MUG113 (pfam13455), RVT-GII, GIIM (pfam08388), McrA (COG4058), PinE (COG1961), Zn_ribbon_recom (pfam13408), DUF5372 (pfam17342), HTH_17 (pfam12728)

Seq: AJLJ01000342.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00365, whole genome shotgun sequence (1358 bp)
Overview 1 RT 1: 580-1342 bp Neighborhood of RT #1 [580, 1356] RVT_N RVT-GII Feature: gene Location: 580-1356 bp Feature: domain Description: RVT_N Location: 607-847 bp Feature: domain Description: RVT_N Location: 607-847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 904-1342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 904-1342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: AJLJ01000377.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00402, whole genome shotgun sequence (4538 bp)
Overview 1 RT 1: 2104-4361 bp Neighborhood of RT #1 [2104, 4537] GlxA RVT_N RVT-GII Feature: gene Location: 2104-3000 bp Feature: domain Description: GlxA Location: 2692-2995 bp Feature: domain Description: GlxA Location: 2692-2995 bp Feature: gene Location: 3171-3329 bp Feature: gene Location: 3587-4537 bp Feature: domain Description: RVT_N Location: 3617-3863 bp Feature: domain Description: RVT_N Location: 3617-3863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3914-4361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3914-4361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlxA (COG4977), RVT_N (pfam13655), RVT-GII

Seq: AJLJ01000378.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00403, whole genome shotgun sequence (1026 bp)
Overview 1 RT 1: 3-882 bp Neighborhood of RT #1 [3, 968] RVT-GII KOG4768 Feature: gene Location: 3-968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33-210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33-210 bp Feature: domain Description: KOG4768 Location: 309-882 bp Feature: domain Description: KOG4768 Location: 309-882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: AJLJ01000403.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00431, whole genome shotgun sequence (1317 bp)
Overview 1 RT 1: 1-1003 bp Neighborhood of RT #1 [1, 1053] RVT-GII RVT_N Feature: gene Location: 1-576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64-559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64-559 bp Feature: gene Location: 706-1053 bp Feature: domain Description: RVT_N Location: 841-1003 bp Feature: domain Description: RVT_N Location: 841-1003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RVT_N (pfam13655)

Seq: AJLJ01000472.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00504, whole genome shotgun sequence (1718 bp)
Overview 1 RT 1: 3-1593 bp Neighborhood of RT #1 [3, 1640] RVT_N RVT-GII GIIM McrA Feature: gene Location: 3-1640 bp Feature: domain Description: RVT_N Location: 9-165 bp Feature: domain Description: RVT_N Location: 9-165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210-894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210-894 bp Feature: domain Description: GIIM Note: maturase Location: 1005-1221 bp Feature: domain Description: GIIM Note: maturase Location: 1005-1221 bp Feature: domain Description: McrA Location: 1326-1593 bp Feature: domain Description: McrA Location: 1326-1593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: AJLJ01000484.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00519, whole genome shotgun sequence (4489 bp)
Overview 1 RT 1: 22-3943 bp Neighborhood of RT #1 [22, 3943] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 22-1983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1228 bp Feature: domain Description: Intron_maturas2 Location: 1330-1567 bp Feature: domain Description: Intron_maturas2 Location: 1330-15 67 bp Feature: domain Description: HNHc Note: nucleases Location: 1726-1915 bp Feature: domain Description: HNHc Note: nucleases Location: 1726-1915 bp Feature: gene Location: 2262-2459 bp Feature: gene Location: 2648-3943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: AJLJ01000496.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00538, whole genome shotgun sequence (150117 bp)
Overview 1 RT 1: 94060-99210 bp Neighborhood of RT #1 [94060, 99210] Uma2 group_II_RT_mat RVT-UG19 zf-IS66 DDE_Tnp_IS66 Feature: gene Location: 94060-94689 bp Feature: domain Description: Uma2 Location: 94084-94570 bp Feature: domain Description: Uma2 Location: 94084-94570 bp Feature: gene Location: 94705-94851 bp Feature: gene Location: 94930-97311 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 94978-95236 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 94978-95236 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 95311-95788 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 95311-95788 bp Feature: gene Location: 97418-98821 bp Feature: domain Description: zf-IS66 Location: 97694-97835 bp Feature: domain Description: zf-IS66 Location: 97694-97835 bp Feature: domain Description: DDE_Tnp_IS66 Location: 97883-98690 bp Feature: domain Description: DDE_Tnp_IS66 Location: 97883-98690 bp Feature: gene Location: 98974-99210 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), group_II_RT_mat (TIGR04416), RVT-UG19, zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)