myRT

myRT report for GCA_000317535.1_ASM31753v1

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Seq: CP003642.1 Cylindrospermum stagnale PCC 7417, complete genome (7003560 bp)
Overview 1 RT 1: 1299136-1302272 bp 2 RT 2: 5522649-5527411 bp 3 RT 3: 6250293-6262955 bp Neighborhood of RT #1 [1299136, 1302274] RVT-Retrons YafQ Neighborhood of RT #2 [5522649, 5527422] PRK02733 PRK00704 RVT_N RVT-GII GIIM McrA gmk RemA Neighborhood of RT #3 [6250293, 6262987] PqqL PqqL eMpr eMpr RVT_N RVT-GII GIIM HNHc PreP CheA REC Feature: gene Location: 1299136-1299453 bp Feature: gene Location: 1299466-1300341 bp Feature: gene Location: 1300345-1301433 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1300519-1301125 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 30051 9-1 301 1 25 bp Feature: gene Location: 1301800-1302006 bp Feature: gene Location: 1302053-1302274 bp Feature: domain Description: YafQ Location: 1302113-1302272 bp Feature: domain Description: YafQ Location: 1 3021 1 3-1 302272 bp Feature: gene Location: 5522649-5522798 bp Feature: domain Description: PRK02733 Location: 5522676-5522793 bp Feature: domain Description: PRK02733 Location: 5522676-5522793 bp Feature: gene Location: 5523060-5523581 bp Feature: domain Description: PRK00704 Location: 5523129-5523573 bp Feature: domain Description: PRK00704 Location: 55231 29-5523573 bp Feature: gene Location: 5523799-5525316 bp Feature: RT Description: RVT_N Location: 5523841-5524078 bp Feature: RT Description: RVT_N Location: 5523841 -5524078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5524138-5524732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55241 38-5524732 bp Feature: domain Description: GIIM Note: maturase Location: 5524792-5524960 bp Feature: domain Description: GIIM Note: maturase Location: 5524792-5524960 bp Feature: domain Description: McrA Location: 5524984-5525296 bp Feature: domain Description: McrA Location: 5524984-5525296 bp Feature: gene Location: 5526252-5526848 bp Feature: domain Description: gmk Location: 5526306-5526837 bp Feature: domain Description: gmk Location: 5526306-5526837 bp Feature: gene Location: 5527102-5527422 bp Feature: domain Description: RemA Location: 5527159-5527411 bp Feature: domain Description: RemA Location: 55271 59-552741 1 bp Feature: gene Location: 6250293-6253040 bp Feature: domain Description: PqqL Location: 6250401-6251646 bp Feature: domain Description: PqqL Location: 6250401 -6251 646 bp Feature: domain Description: PqqL Location: 6251787-6253020 bp Feature: domain Description: PqqL Location: 6251 787-6253020 bp Feature: gene Location: 6253691-6254839 bp Feature: domain Description: eMpr Location: 6254048-6254570 bp Feature: domain Description: eMpr Location: 6254048-6254570 bp Feature: domain Description: eMpr Location: 6254663-6254759 bp Feature: domain Description: eMpr Location: 6254663-6254759 bp Feature: gene Location: 6255712-6257385 bp Feature: RT Description: RVT_N Location: 6255754-6256000 bp Feature: RT Description: RVT_N Location: 6255754-6256000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6256048-6256687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6256048-6256687 bp Feature: domain Description: GIIM Note: maturase Location: 6256765-6256993 bp Feature: domain Description: GIIM Note: maturase Location: 6256765-6256993 bp Feature: domain Description: HNHc Note: nucleases Location: 6257197-6257362 bp Feature: domain Description: HNHc Note: nucleases Location: 62571 97-6257362 bp Feature: gene Location: 6257588-6259723 bp Feature: domain Description: PreP Location: 6257741-6259715 bp Feature: domain Description: PreP Location: 6257741 -625971 5 bp Feature: gene Location: 6259766-6262987 bp Feature: domain Description: CheA Location: 6260420-6262523 bp Feature: domain Description: CheA Location: 6260420-6262523 bp Feature: domain Description: REC Location: 6262613-6262955 bp Feature: domain Description: REC Location: 626261 3-6262955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, YafQ (COG3041), PRK02733 (photosystem I reaction center subunit IX; Provisional), PRK00704 (photosystem I reaction center protein subunit XI; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), gmk (PRK14738), RemA (COG2052)
PqqL (COG0612), eMpr (COG3591), HNHc (smart00507), PreP (COG1505), CheA (COG0643), REC (smart00448)

Seq: CP003643.1 Cylindrospermum stagnale PCC 7417 plasmid pCYLST.01, partial sequence (431821 bp)
Overview 1 RT 1: 138200-145157 bp 2 RT 2: 373104-377456 bp 3 RT 3: 381182-387772 bp Neighborhood of RT #1 [138200, 145216] MobC Relaxase RVT_N RVT-GII GIIM HNHc COG3464 COG3464 PRK12275 Neighborhood of RT #2 [373104, 377479] YddW RVT_N RVT-GII GIIM HNHc Neighborhood of RT #3 [381182, 387772] HTH_XRE DZR xerC RVT_N RVT-GII GIIM HNHc HTH_XRE Feature: gene Location: 138200-138655 bp Feature: domain Description: MobC Location: 138452-138572 bp Feature: domain Description: MobC Location: 138452 -138572 bp Feature: gene Location: 138633-140288 bp Feature: domain Description: Relaxase Location: 138660-139230 bp Feature: domain Description: Relaxase Location: 138660-1392 30 bp Feature: gene Location: 141529-143199 bp Feature: RT Description: RVT_N Location: 141577-141823 bp Feature: RT Description: RVT_N Location: 141577-14182 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141871-142510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141871-142 510 bp Feature: domain Description: GIIM Note: maturase Location: 142588-142816 bp Feature: domain Description: GIIM Note: maturase Location: 142 588-142 816 bp Feature: domain Description: HNHc Note: nucleases Location: 143020-143179 bp Feature: domain Description: HNHc Note: nucleases Location: 14302 0-143179 bp Feature: gene Location: 143327-144988 bp Feature: domain Description: COG3464 Location: 143390-144080 bp Feature: domain Description: COG3464 Location: 143390-144080 bp Feature: domain Description: COG3464 Location: 144155-144983 bp Feature: domain Description: COG3464 Location: 144155-144983 bp Feature: gene Location: 145022-145216 bp Feature: domain Description: PRK12275 Location: 145025-145157 bp Feature: domain Description: PRK12 2 75 Location: 14502 5-145157 bp Feature: gene Location: 373104-373487 bp Feature: gene Location: 373659-374966 bp Feature: domain Description: YddW Location: 373665-374943 bp Feature: domain Description: YddW Location: 373665-374943 bp Feature: gene Location: 375806-377479 bp Feature: RT Description: RVT_N Location: 375848-376094 bp Feature: RT Description: RVT_N Location: 375848-376094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376142-376781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376142 -376781 bp Feature: domain Description: GIIM Note: maturase Location: 376862-377087 bp Feature: domain Description: GIIM Note: maturase Location: 376862 -377087 bp Feature: domain Description: HNHc Note: nucleases Location: 377291-377456 bp Feature: domain Description: HNHc Note: nucleases Location: 3772 91-377456 bp Feature: gene Location: 381182-381637 bp Feature: domain Description: HTH_XRE Location: 381242-381407 bp Feature: domain Description: HTH_XRE Location: 3812 42 -381407 bp Feature: domain Description: DZR Location: 381461-381617 bp Feature: domain Description: DZR Location: 381461-381617 bp Feature: gene Location: 381724-382617 bp Feature: domain Description: xerC Location: 381772-382591 bp Feature: domain Description: xerC Location: 381772 -382 591 bp Feature: gene Location: 383454-385127 bp Feature: RT Description: RVT_N Location: 383496-383742 bp Feature: RT Description: RVT_N Location: 383496-383742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383790-384429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383790-38442 9 bp Feature: domain Description: GIIM Note: maturase Location: 384510-384735 bp Feature: domain Description: GIIM Note: maturase Location: 384510-384735 bp Feature: domain Description: HNHc Note: nucleases Location: 384939-385104 bp Feature: domain Description: HNHc Note: nucleases Location: 384939-385104 bp Feature: gene Location: 385696-386103 bp Feature: domain Description: HTH_XRE Location: 385717-385867 bp Feature: domain Description: HTH_XRE Location: 385717-385867 bp Feature: gene Location: 386612-387772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MobC (pfam05713), Relaxase (pfam03432), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG3464 (Transposase ), PRK12275 (hypothetical protein; Reviewed), YddW (COG1649), HTH_XRE (smart00530)
DZR (pfam12773), xerC (PRK01287)