myRT

myRT report for GCA_000319775.1_ASM31977v1

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Seq: ANKP01000071.1 Cupriavidus sp. HMR-1 Contig071, whole genome shotgun sequence (53123 bp)
Overview 1 RT 1: 20014-29737 bp Neighborhood of RT #1 [20014, 29769] CitB BaeS PRK15347 RVT_N RVT-GII GIIM HNHc PRK05627 ileS Feature: gene Location: 20014-20673 bp Feature: domain Description: CitB Location: 20038-20659 bp Feature: domain Description: CitB Location: 20038-20659 bp Feature: gene Location: 20739-22577 bp Feature: domain Description: BaeS Location: 21030-22137 bp Feature: domain Description: BaeS Location: 21 030-221 37 bp Feature: domain Description: PRK15347 Location: 22221-22545 bp Feature: domain Description: PRK1 5347 Location: 22221 -22545 bp Feature: gene Location: 23963-25663 bp Feature: RT Description: RVT_N Location: 24020-24263 bp Feature: RT Description: RVT_N Location: 24020-24263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24308-24956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24308-24956 bp Feature: domain Description: GIIM Note: maturase Location: 25013-25241 bp Feature: domain Description: GIIM Note: maturase Location: 2501 3-25241 bp Feature: domain Description: HNHc Note: nucleases Location: 25466-25625 bp Feature: domain Description: HNHc Note: nucleases Location: 25466-25625 bp Feature: gene Location: 25787-26770 bp Feature: domain Description: PRK05627 Location: 25796-26708 bp Feature: domain Description: PRK05627 Location: 25796-26708 bp Feature: gene Location: 26890-29769 bp Feature: domain Description: ileS Location: 26923-29737 bp Feature: domain Description: ileS Location: 26923-29737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CitB (TIGR02484), BaeS (COG0642), PRK15347 (two component system sensor kinase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05627 (bifunctional riboflavin kinase/FAD synthetase), ileS (TIGR00392)

Seq: ANKP01000024.1 Cupriavidus sp. HMR-1 Contig024, whole genome shotgun sequence (105671 bp)
Overview 1 RT 1: 99130-105434 bp Neighborhood of RT #1 [99130, 105439] Spr RssA RVT_N RVT-GII GIIM HNHc gltX Feature: gene Location: 99130-99810 bp Feature: domain Description: Spr Location: 99328-99703 bp Feature: domain Description: Spr Location: 9932 8-99703 bp Feature: gene Location: 99944-100858 bp Feature: domain Description: RssA Location: 100037-100823 bp Feature: domain Description: RssA Location: 100037-10082 3 bp Feature: gene Location: 102190-103890 bp Feature: RT Description: RVT_N Location: 102247-102490 bp Feature: RT Description: RVT_N Location: 102 2 47-102 490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102535-103183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 535-103183 bp Feature: domain Description: GIIM Note: maturase Location: 103237-103468 bp Feature: domain Description: GIIM Note: maturase Location: 1032 37-103468 bp Feature: domain Description: HNHc Note: nucleases Location: 103693-103852 bp Feature: domain Description: HNHc Note: nucleases Location: 103693-103852 bp Feature: gene Location: 104042-105439 bp Feature: domain Description: gltX Location: 104048-105434 bp Feature: domain Description: gltX Location: 104048-105434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), gltX (PRK14895), Spr (COG0791), RssA (COG1752)

Seq: ANKP01000037.1 Cupriavidus sp. HMR-1 Contig037, whole genome shotgun sequence (26423 bp)
Overview 1 RT 1: 914-6434 bp Neighborhood of RT #1 [914, 6451] PspE GRX_bact RVT_N RVT-GII GIIM HNHc PRK05751 gpsA Feature: gene Location: 914-1327 bp Feature: domain Description: PspE Location: 1028-1322 bp Feature: domain Description: PspE Location: 1028-13 22 bp Feature: gene Location: 1406-1663 bp Feature: domain Description: GRX_bact Location: 1418-1655 bp Feature: domain Description: GRX_bact Location: 1418-1655 bp Feature: gene Location: 2912-4627 bp Feature: RT Description: RVT_N Location: 2969-3212 bp Feature: RT Description: RVT_N Location: 2969-3 212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3257-3905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 257-3 905 bp Feature: domain Description: GIIM Note: maturase Location: 3959-4190 bp Feature: domain Description: GIIM Note: maturase Location: 3 959-4190 bp Feature: domain Description: HNHc Note: nucleases Location: 4409-4574 bp Feature: domain Description: HNHc Note: nucleases Location: 4409-4574 bp Feature: gene Location: 4786-5304 bp Feature: domain Description: PRK05751 Location: 4795-5248 bp Feature: domain Description: PRK05751 Location: 4795-5248 bp Feature: gene Location: 5423-6451 bp Feature: domain Description: gpsA Location: 5426-6434 bp Feature: domain Description: gpsA Location: 5426-643 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GRX_bact (TIGR02181), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05751 (preprotein translocase subunit SecB; Validated), gpsA (PRK00094), PspE (COG0607)

Seq: ANKP01000145.1 Cupriavidus sp. HMR-1 Contig145, whole genome shotgun sequence (16928 bp)
Overview 1 RT 1: 3806-8121 bp Neighborhood of RT #1 [3806, 8738] PAAR_CT_2 SRAP RVT-Retrons Trypsin_2 HTH_XRE T5orf172 Feature: gene Location: 3806-4333 bp Feature: domain Description: PAAR_CT_2 Location: 3818-4049 bp Feature: domain Description: PAAR_CT_2 Location: 3818-4 04 9 bp Feature: gene Location: 4441-5136 bp Feature: domain Description: SRAP Location: 4444-5089 bp Feature: domain Description: SRAP Location: 4 4 4 4 -5089 bp Feature: gene Location: 5182-7110 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5356-5962 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5356-5962 bp Feature: domain Description: Trypsin_2 Location: 6436-6919 bp Feature: domain Description: Trypsin_2 Location: 64 36-6919 bp Feature: gene Location: 7295-7690 bp Feature: domain Description: HTH_XRE Location: 7373-7544 bp Feature: domain Description: HTH_XRE Location: 7373-754 4 bp Feature: gene Location: 7860-8738 bp Feature: domain Description: T5orf172 Location: 7869-8121 bp Feature: domain Description: T5orf172 Location: 7869-8121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAAR_CT_2 (cd14744), SRAP (pfam02586), RVT-Retrons, Trypsin_2 (pfam13365), HTH_XRE (smart00530), T5orf172 (smart00974)

Seq: ANKP01000159.1 Cupriavidus sp. HMR-1 Contig159, whole genome shotgun sequence (5922 bp)
Overview 1 RT 1: 1437-5274 bp Neighborhood of RT #1 [1437, 5432] XerD INT_RitB_C_like Resolvase Recombinase Zn_ribbon_recom RVT-GII Feature: gene Location: 1437-2639 bp Feature: domain Description: XerD Location: 1476-1815 bp Feature: domain Description: XerD Location: 1476-1815 bp Feature: domain Description: INT_RitB_C_like Location: 2157-2559 bp Feature: domain Description: INT_RitB_C_like Location: 215 7-25 5 9 bp Feature: gene Location: 2628-4394 bp Feature: domain Description: Resolvase Location: 2649-3087 bp Feature: domain Description: Resolvase Location: 2649-3087 bp Feature: domain Description: Recombinase Location: 3183-3543 bp Feature: domain Description: Recombinase Location: 3183-35 43 bp Feature: domain Description: Zn_ribbon_recom Location: 3588-3792 bp Feature: domain Description: Zn_ribbon_recom Location: 35 88-3792 bp Feature: gene Location: 4557-5432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4884-5274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4884-5 274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerD (COG4974), INT_RitB_C_like (cd00797), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII