myRT

myRT report for GCA_000319875.1_Esch_coli_Ec_11-9990_V2

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Seq: KB021592.1 Escherichia coli O104:H4 str. Ec11-9990 genomic scaffold supercont1.15, whole genome shotgun sequence (75310 bp)
Overview 1 RT 1: 11-3842 bp Neighborhood of RT #1 [11, 3842] InsG RVT-GII GIIM PHA02517 Feature: gene Location: 11-151 bp Feature: gene Location: 174-1286 bp Feature: domain Description: InsG Location: 177-1215 bp Feature: domain Description: InsG Location: 1 77-1 21 5 bp Feature: gene Location: 1379-2725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1475-2207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 475-2207 bp Feature: domain Description: GIIM Note: maturase Location: 2282-2480 bp Feature: domain Description: GIIM Note: maturase Location: 2282-2480 bp Feature: gene Location: 2917-3288 bp Feature: domain Description: PHA02517 Location: 2920-3286 bp Feature: domain Description: PHA0251 7 Location: 2920-3286 bp Feature: gene Location: 3492-3842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsG (COG3385), PHA02517 (putative transposase OrfB; Reviewed)

Seq: KB021587.1 Escherichia coli O104:H4 str. Ec11-9990 genomic scaffold supercont1.10, whole genome shotgun sequence (16364 bp)
Overview 1 RT 1: 11420-15861 bp Neighborhood of RT #1 [11420, 16106] TonB-siderophor PHA02517 RVT-GII GIIM Feature: gene Location: 11420-13618 bp Feature: domain Description: TonB-siderophor Location: 11555-13616 bp Feature: domain Description: TonB-siderophor Location: 11555-13616 bp Feature: gene Location: 14020-14391 bp Feature: domain Description: PHA02517 Location: 14023-14389 bp Feature: domain Description: PHA02 517 Location: 1402 3-14389 bp Feature: gene Location: 14583-16106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14856-15588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14856-15588 bp Feature: domain Description: GIIM Note: maturase Location: 15663-15861 bp Feature: domain Description: GIIM Note: maturase Location: 15663-15861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TonB-siderophor (TIGR01783), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: KB021580.1 Escherichia coli O104:H4 str. Ec11-9990 genomic scaffold supercont1.3, whole genome shotgun sequence (22715 bp)
Overview 1 RT 1: 13432-22098 bp Neighborhood of RT #1 [13432, 22100] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 Peptidase_S6 autotrans_barl Feature: gene Location: 13432-14583 bp Feature: domain Description: HTH_38 Location: 13441-13555 bp Feature: domain Description: HTH_3 8 Location: 13 441-13 555 bp Feature: domain Description: Tra8 Location: 13591-14572 bp Feature: domain Description: Tra8 Location: 13 591-14572 bp Feature: gene Location: 14900-15139 bp Feature: domain Description: PHA02517 Location: 14903-15074 bp Feature: domain Description: PHA02517 Location: 14903 -15074 bp Feature: gene Location: 15731-17254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16004-16736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16004-1673 6 bp Feature: domain Description: GIIM Note: maturase Location: 16811-17009 bp Feature: domain Description: GIIM Note: maturase Location: 16811-17009 bp Feature: gene Location: 17431-17817 bp Feature: domain Description: PHA02517 Location: 17434-17815 bp Feature: domain Description: PHA02517 Location: 1743 4-17815 bp Feature: gene Location: 17982-22100 bp Feature: domain Description: Peptidase_S6 Location: 18135-20307 bp Feature: domain Description: Peptidase_S6 Location: 1813 5-203 07 bp Feature: domain Description: autotrans_barl Location: 20871-22098 bp Feature: domain Description: autotrans_barl Location: 20871-22098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: KB021588.1 Escherichia coli O104:H4 str. Ec11-9990 genomic scaffold supercont1.11, whole genome shotgun sequence (531586 bp)
Overview 1 RT 1: 192597-197726 bp Neighborhood of RT #1 [192597, 197728] InsE PHA02517 RVT-GII GIIM fecE Feature: gene Location: 192597-192899 bp Feature: domain Description: InsE Location: 192636-192885 bp Feature: domain Description: InsE Location: 192636-192885 bp Feature: gene Location: 193141-193380 bp Feature: domain Description: PHA02517 Location: 193144-193315 bp Feature: domain Description: PHA02517 Location: 19314 4 -193315 bp Feature: gene Location: 193972-195495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194245-194977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194 24 5-194 977 bp Feature: domain Description: GIIM Note: maturase Location: 195052-195250 bp Feature: domain Description: GIIM Note: maturase Location: 195052-195250 bp Feature: gene Location: 196146-196403 bp Feature: gene Location: 196961-197728 bp Feature: domain Description: fecE Location: 196964-197726 bp Feature: domain Description: fecE Location: 196964 -197726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), fecE (PRK11231)

Seq: KB021581.1 Escherichia coli O104:H4 str. Ec11-9990 genomic scaffold supercont1.4, whole genome shotgun sequence (387846 bp)
Overview 1 RT 1: 6865-13746 bp Neighborhood of RT #1 [6865, 13799] PHA02517 RVT-GII GIIM PHA02517 VI_ClpV1 Feature: gene Location: 6865-7014 bp Feature: gene Location: 7571-7957 bp Feature: domain Description: PHA02517 Location: 7574-7955 bp Feature: domain Description: PHA025 17 Location: 75 74-795 5 bp Feature: gene Location: 8134-9657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8407-9139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8407-9139 bp Feature: domain Description: GIIM Note: maturase Location: 9214-9412 bp Feature: domain Description: GIIM Note: maturase Location: 9214-9412 bp Feature: gene Location: 10249-10728 bp Feature: domain Description: PHA02517 Location: 10309-10663 bp Feature: domain Description: PHA025 17 Location: 10309-10663 bp Feature: gene Location: 11250-13799 bp Feature: domain Description: VI_ClpV1 Location: 11286-13746 bp Feature: domain Description: VI_ClpV1 Location: 11286-13746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), VI_ClpV1 (TIGR03345), RVT-GII, GIIM (pfam08388)