myRT

myRT report for GCA_000319995.1_Esch_coli_11-02030_V1

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Seq: AMVR01000006.1 Escherichia coli O104:H4 str. 11-02030 supercont1.14, whole genome shotgun sequence (17695 bp)
Overview 1 RT 1: 13722-17299 bp Neighborhood of RT #1 [13722, 17544] HTH_38 Tra8 PHA02517 RVT-GII GIIM Feature: gene Location: 13722-14873 bp Feature: domain Description: HTH_38 Location: 13731-13845 bp Feature: domain Description: HTH_38 Location: 1 3731 -1 3845 bp Feature: domain Description: Tra8 Location: 13881-14862 bp Feature: domain Description: Tra8 Location: 1 3881 -1 4862 bp Feature: gene Location: 15190-15429 bp Feature: domain Description: PHA02517 Location: 15193-15364 bp Feature: domain Description: PHA0251 7 Location: 1 51 93-1 5364 bp Feature: gene Location: 16021-17544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16294-17026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6294-1 7026 bp Feature: domain Description: GIIM Note: maturase Location: 17101-17299 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 01 -1 7299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AMVR01000016.1 Escherichia coli O104:H4 str. 11-02030 supercont1.23, whole genome shotgun sequence (162418 bp)
Overview 1 RT 1: 151749-159513 bp Neighborhood of RT #1 [151749, 159515] InsE PHA02517 RVT-GII GIIM PHA02517 Peptidase_S6 autotrans_barl Feature: gene Location: 151749-152075 bp Feature: domain Description: InsE Location: 151752-152073 bp Feature: domain Description: InsE Location: 151752 -152 073 bp Feature: gene Location: 152075-152554 bp Feature: domain Description: PHA02517 Location: 152135-152489 bp Feature: domain Description: PHA02 517 Location: 152 135-152 489 bp Feature: gene Location: 153146-154669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153419-154151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153419-154151 bp Feature: domain Description: GIIM Note: maturase Location: 154226-154424 bp Feature: domain Description: GIIM Note: maturase Location: 1542 2 6-15442 4 bp Feature: gene Location: 154846-155232 bp Feature: domain Description: PHA02517 Location: 154849-155230 bp Feature: domain Description: PHA02 517 Location: 154849-1552 30 bp Feature: gene Location: 155397-159515 bp Feature: domain Description: Peptidase_S6 Location: 155550-157722 bp Feature: domain Description: Peptidase_S6 Location: 155550-15772 2 bp Feature: domain Description: autotrans_barl Location: 158286-159513 bp Feature: domain Description: autotrans_barl Location: 1582 86-159513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: AMVR01000033.1 Escherichia coli O104:H4 str. 11-02030 supercont1.39, whole genome shotgun sequence (2806 bp)
Overview 1 RT 1: 1-2275 bp Neighborhood of RT #1 [1, 2275] RVT-GII GIIM PHA02517 Feature: gene Location: 1-1158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-640 bp Feature: domain Description: GIIM Note: maturase Location: 715-913 bp Feature: domain Description: GIIM Note: maturase Location: 715-913 bp Feature: gene Location: 1350-1721 bp Feature: domain Description: PHA02517 Location: 1353-1719 bp Feature: domain Description: PHA02517 Location: 13 53 -1719 bp Feature: gene Location: 1925-2275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: AMVR01000007.1 Escherichia coli O104:H4 str. 11-02030 supercont1.15, whole genome shotgun sequence (681003 bp)
Overview 1 RT 1: 8318-15198 bp Neighborhood of RT #1 [8318, 15251] PHA02517 RVT-GII GIIM PHA02517 VI_ClpV1 Feature: gene Location: 8318-8467 bp Feature: gene Location: 9024-9410 bp Feature: domain Description: PHA02517 Location: 9027-9408 bp Feature: domain Description: PHA02517 Location: 9027-94 08 bp Feature: gene Location: 9587-11110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9860-10592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9860-10592 bp Feature: domain Description: GIIM Note: maturase Location: 10667-10865 bp Feature: domain Description: GIIM Note: maturase Location: 10667-10865 bp Feature: gene Location: 11702-12265 bp Feature: domain Description: PHA02517 Location: 11846-12200 bp Feature: domain Description: PHA02517 Location: 1184 6-12200 bp Feature: gene Location: 12702-15251 bp Feature: domain Description: VI_ClpV1 Location: 12738-15198 bp Feature: domain Description: VI_ClpV1 Location: 12738-15198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), VI_ClpV1 (TIGR03345), RVT-GII, GIIM (pfam08388)

Seq: AMVR01000017.1 Escherichia coli O104:H4 str. 11-02030 supercont1.24, whole genome shotgun sequence (16526 bp)
Overview 1 RT 1: 10259-16340 bp Neighborhood of RT #1 [10259, 16342] TonB-siderophor PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 10259-12457 bp Feature: domain Description: TonB-siderophor Location: 10394-12455 bp Feature: domain Description: TonB-siderophor Location: 10394-1245 5 bp Feature: gene Location: 12859-13230 bp Feature: domain Description: PHA02517 Location: 12862-13228 bp Feature: domain Description: PHA025 17 Location: 12862-13228 bp Feature: gene Location: 13422-14945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13695-14427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13695 -14427 bp Feature: domain Description: GIIM Note: maturase Location: 14502-14700 bp Feature: domain Description: GIIM Note: maturase Location: 145 02-14700 bp Feature: gene Location: 15537-16016 bp Feature: domain Description: PHA02517 Location: 15597-15951 bp Feature: domain Description: PHA025 17 Location: 15 5 97-15 95 1 bp Feature: gene Location: 16016-16342 bp Feature: domain Description: InsE Location: 16019-16340 bp Feature: domain Description: InsE Location: 16019-16340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TonB-siderophor (TIGR01783), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: AMVR01000019.1 Escherichia coli O104:H4 str. 11-02030 supercont1.26, whole genome shotgun sequence (55481 bp)
Overview 1 RT 1: 31172-36301 bp Neighborhood of RT #1 [31172, 36303] InsE PHA02517 RVT-GII GIIM fecE Feature: gene Location: 31172-31474 bp Feature: domain Description: InsE Location: 31211-31460 bp Feature: domain Description: InsE Location: 31211-3146 0 bp Feature: gene Location: 31716-31955 bp Feature: domain Description: PHA02517 Location: 31719-31890 bp Feature: domain Description: PHA02517 Location: 31719-31890 bp Feature: gene Location: 32547-34070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32820-33552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32820-33552 bp Feature: domain Description: GIIM Note: maturase Location: 33627-33825 bp Feature: domain Description: GIIM Note: maturase Location: 336 27-33825 bp Feature: gene Location: 34721-34978 bp Feature: gene Location: 35536-36303 bp Feature: domain Description: fecE Location: 35539-36301 bp Feature: domain Description: fecE Location: 35539-36 301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), fecE (PRK11231)