myRT

myRT report for GCA_000320175.1_Esch_coli_11-04080_V1

Download annotations/find similar RTs

Seq: AMVZ01000021.1 Escherichia coli O104:H4 str. 11-04080 supercont1.28, whole genome shotgun sequence (368795 bp)
Overview 1 RT 1: 31172-36301 bp Neighborhood of RT #1 [31172, 36303] InsE PHA02517 RVT-GII GIIM fecE Feature: gene Location: 31172-31474 bp Feature: domain Description: InsE Location: 31211-31460 bp Feature: domain Description: InsE Location: 31 21 1 -31 460 bp Feature: gene Location: 31716-31955 bp Feature: domain Description: PHA02517 Location: 31719-31890 bp Feature: domain Description: PHA0251 7 Location: 31 71 9-31 890 bp Feature: gene Location: 32547-34070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32820-33552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32820-33552 bp Feature: domain Description: GIIM Note: maturase Location: 33627-33825 bp Feature: domain Description: GIIM Note: maturase Location: 33627-33825 bp Feature: gene Location: 34721-34978 bp Feature: gene Location: 35536-36303 bp Feature: domain Description: fecE Location: 35539-36301 bp Feature: domain Description: fecE Location: 35539-36301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), fecE (PRK11231)

Seq: AMVZ01000002.1 Escherichia coli O104:H4 str. 11-04080 supercont1.10, whole genome shotgun sequence (329957 bp)
Overview 1 RT 1: 325984-329561 bp Neighborhood of RT #1 [325984, 329806] HTH_38 Tra8 PHA02517 RVT-GII GIIM Feature: gene Location: 325984-327135 bp Feature: domain Description: HTH_38 Location: 325993-326107 bp Feature: domain Description: HTH_38 Location: 32 5993-32 6107 bp Feature: domain Description: Tra8 Location: 326143-327124 bp Feature: domain Description: Tra8 Location: 32 6143-32 712 4 bp Feature: gene Location: 327452-327691 bp Feature: domain Description: PHA02517 Location: 327455-327626 bp Feature: domain Description: PHA02 517 Location: 32 7455-32 762 6 bp Feature: gene Location: 328283-329806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328556-329288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 8556-32 92 88 bp Feature: domain Description: GIIM Note: maturase Location: 329363-329561 bp Feature: domain Description: GIIM Note: maturase Location: 32 9363-32 9561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AMVZ01000004.1 Escherichia coli O104:H4 str. 11-04080 supercont1.12, whole genome shotgun sequence (388106 bp)
Overview 1 RT 1: 5567-12447 bp Neighborhood of RT #1 [5567, 12500] PHA02517 RVT-GII GIIM PHA02517 VI_ClpV1 Feature: gene Location: 5567-5716 bp Feature: gene Location: 6273-6659 bp Feature: domain Description: PHA02517 Location: 6276-6657 bp Feature: domain Description: PHA02517 Location: 6276-6657 bp Feature: gene Location: 6836-8359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7109-7841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7109-7841 bp Feature: domain Description: GIIM Note: maturase Location: 7916-8114 bp Feature: domain Description: GIIM Note: maturase Location: 7916-8114 bp Feature: gene Location: 8951-9514 bp Feature: domain Description: PHA02517 Location: 9095-9449 bp Feature: domain Description: PHA02517 Location: 9095-9449 bp Feature: gene Location: 9951-12500 bp Feature: domain Description: VI_ClpV1 Location: 9987-12447 bp Feature: domain Description: VI_ClpV1 Location: 9987-12447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), VI_ClpV1 (TIGR03345)

Seq: AMVZ01000019.1 Escherichia coli O104:H4 str. 11-04080 supercont1.26, whole genome shotgun sequence (175893 bp)
Overview 1 RT 1: 10259-16340 bp Neighborhood of RT #1 [10259, 16342] TonB-siderophor PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 10259-12457 bp Feature: domain Description: TonB-siderophor Location: 10394-12455 bp Feature: domain Description: TonB-siderophor Location: 10394 -124 55 bp Feature: gene Location: 12859-13305 bp Feature: domain Description: PHA02517 Location: 12862-13303 bp Feature: domain Description: PHA02517 Location: 12862-13303 bp Feature: gene Location: 13422-14945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13695-14427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13695-14 4 27 bp Feature: domain Description: GIIM Note: maturase Location: 14502-14700 bp Feature: domain Description: GIIM Note: maturase Location: 14 502-14 700 bp Feature: gene Location: 15537-16016 bp Feature: domain Description: PHA02517 Location: 15597-15951 bp Feature: domain Description: PHA02517 Location: 15597-15951 bp Feature: gene Location: 16016-16342 bp Feature: domain Description: InsE Location: 16019-16340 bp Feature: domain Description: InsE Location: 16019-1634 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TonB-siderophor (TIGR01783), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: AMVZ01000018.1 Escherichia coli O104:H4 str. 11-04080 supercont1.25, whole genome shotgun sequence (15156 bp)
Overview 1 RT 1: 4486-12250 bp Neighborhood of RT #1 [4486, 12252] InsE PHA02517 RVT-GII GIIM PHA02517 Peptidase_S6 autotrans_barl Feature: gene Location: 4486-4812 bp Feature: domain Description: InsE Location: 4489-4810 bp Feature: domain Description: InsE Location: 4489-4810 bp Feature: gene Location: 4812-5291 bp Feature: domain Description: PHA02517 Location: 4872-5226 bp Feature: domain Description: PHA025 17 Location: 4872-5 226 bp Feature: gene Location: 5883-7406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6156-6888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 615 6-6888 bp Feature: domain Description: GIIM Note: maturase Location: 6963-7161 bp Feature: domain Description: GIIM Note: maturase Location: 6963-7161 bp Feature: gene Location: 7583-7969 bp Feature: domain Description: PHA02517 Location: 7586-7967 bp Feature: domain Description: PHA025 17 Location: 75 86-7967 bp Feature: gene Location: 8134-12252 bp Feature: domain Description: Peptidase_S6 Location: 8287-10459 bp Feature: domain Description: Peptidase_S6 Location: 8287-1045 9 bp Feature: domain Description: autotrans_barl Location: 11023-12250 bp Feature: domain Description: autotrans_barl Location: 11023-1225 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)