myRT

myRT report for GCA_000320255.1_Esch_coli_Ec12-0465_V1

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Seq: KB021461.1 Escherichia coli O104:H4 str. Ec12-0465 genomic scaffold supercont1.3, whole genome shotgun sequence (1230581 bp)
Overview 1 RT 1: 1226561-1230138 bp Neighborhood of RT #1 [1226561, 1230383] HTH_38 Tra8 PHA02517 RVT-GII GIIM Feature: gene Location: 1226561-1227712 bp Feature: domain Description: HTH_38 Location: 1226570-1226684 bp Feature: domain Description: HTH_38 Location: 1 226570-1 226684 bp Feature: domain Description: Tra8 Location: 1226720-1227701 bp Feature: domain Description: Tra8 Location: 1 226720-1 227701 bp Feature: gene Location: 1228029-1228268 bp Feature: domain Description: PHA02517 Location: 1228032-1228203 bp Feature: domain Description: PHA0251 7 Location: 1 228032-1 228203 bp Feature: gene Location: 1228860-1230383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1229133-1229865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2291 33-1 229865 bp Feature: domain Description: GIIM Note: maturase Location: 1229940-1230138 bp Feature: domain Description: GIIM Note: maturase Location: 1 229940-1 2301 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: KB021466.1 Escherichia coli O104:H4 str. Ec12-0465 genomic scaffold supercont1.8, whole genome shotgun sequence (73034 bp)
Overview 1 RT 1: 1-2308 bp Neighborhood of RT #1 [1, 2308] RVT-GII GIIM PHA02517 Feature: gene Location: 1-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-673 bp Feature: domain Description: GIIM Note: maturase Location: 748-946 bp Feature: domain Description: GIIM Note: maturase Location: 748-946 bp Feature: gene Location: 1383-1754 bp Feature: domain Description: PHA02517 Location: 1386-1752 bp Feature: domain Description: PHA02 517 Location: 1386-1752 bp Feature: gene Location: 1958-2308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: KB021462.1 Escherichia coli O104:H4 str. Ec12-0465 genomic scaffold supercont1.4, whole genome shotgun sequence (986437 bp)
Overview 1 RT 1: 6418-13298 bp Neighborhood of RT #1 [6418, 13351] PHA02517 RVT-GII GIIM PHA02517 VI_ClpV1 Feature: gene Location: 6418-6567 bp Feature: gene Location: 7124-7510 bp Feature: domain Description: PHA02517 Location: 7127-7508 bp Feature: domain Description: PHA02517 Location: 7127-7508 bp Feature: gene Location: 7687-9210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7960-8692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7960-8692 bp Feature: domain Description: GIIM Note: maturase Location: 8767-8965 bp Feature: domain Description: GIIM Note: maturase Location: 8767-8965 bp Feature: gene Location: 9802-10365 bp Feature: domain Description: PHA02517 Location: 9946-10300 bp Feature: domain Description: PHA02517 Location: 9946-103 00 bp Feature: gene Location: 10802-13351 bp Feature: domain Description: VI_ClpV1 Location: 10838-13298 bp Feature: domain Description: VI_ClpV1 Location: 1083 8-13 298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VI_ClpV1 (TIGR03345), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: KB021459.1 Escherichia coli O104:H4 str. Ec12-0465 genomic scaffold supercont1.1, whole genome shotgun sequence (2582640 bp)
Overview 1 RT 1: 18375-24456 bp 2 RT 2: 219378-224507 bp Neighborhood of RT #1 [18375, 24458] TonB-siderophor PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [219378, 224509] InsE PHA02517 RVT-GII GIIM fecE Feature: gene Location: 18375-20573 bp Feature: domain Description: TonB-siderophor Location: 18510-20571 bp Feature: domain Description: TonB-siderophor Location: 18510-20571 bp Feature: gene Location: 20975-21346 bp Feature: domain Description: PHA02517 Location: 20978-21344 bp Feature: domain Description: PHA02517 Location: 20978-2134 4 bp Feature: gene Location: 21538-23061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21811-22543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21811-2254 3 bp Feature: domain Description: GIIM Note: maturase Location: 22618-22816 bp Feature: domain Description: GIIM Note: maturase Location: 22618-22816 bp Feature: gene Location: 23653-24132 bp Feature: domain Description: PHA02517 Location: 23713-24067 bp Feature: domain Description: PHA02517 Location: 23713-24 067 bp Feature: gene Location: 24132-24458 bp Feature: domain Description: InsE Location: 24135-24456 bp Feature: domain Description: InsE Location: 24 135-24 4 56 bp Feature: gene Location: 219378-219680 bp Feature: domain Description: InsE Location: 219417-219666 bp Feature: domain Description: InsE Location: 2194 17-219666 bp Feature: gene Location: 219922-220161 bp Feature: domain Description: PHA02517 Location: 219925-220096 bp Feature: domain Description: PHA02517 Location: 219925-220096 bp Feature: gene Location: 220753-222276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221026-221758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221026-221758 bp Feature: domain Description: GIIM Note: maturase Location: 221833-222031 bp Feature: domain Description: GIIM Note: maturase Location: 221833-222031 bp Feature: gene Location: 222927-223184 bp Feature: gene Location: 223742-224509 bp Feature: domain Description: fecE Location: 223745-224507 bp Feature: domain Description: fecE Location: 22374 5-224 507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TonB-siderophor (TIGR01783), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), fecE (PRK11231)