myRT

myRT report for GCA_000330445.1_ASM33044v1

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Seq: ALHY01000166.1 Salmonella enterica subsp. enterica serovar Enteritidis str. SARB17 SEEERB17_029, whole genome shotgun sequence (42157 bp)
Overview 1 RT 1: 25396-30490 bp Neighborhood of RT #1 [25396, 30492] PRK03759 nlpD Peptidase_M23 RVT_N RVT-GII GIIM HNHc PLDc_Nuc VagC Feature: gene Location: 25396-25941 bp Feature: domain Description: PRK03759 Location: 25402-25936 bp Feature: domain Description: PRK03759 Location: 25402-25936 bp Feature: gene Location: 26212-26964 bp Feature: domain Description: nlpD Location: 26305-26530 bp Feature: domain Description: nlpD Location: 26305-26530 bp Feature: domain Description: Peptidase_M23 Location: 26644-26923 bp Feature: domain Description: Peptidase_M23 Location: 26644-26923 bp Feature: gene Location: 27990-29633 bp Feature: RT Description: RVT_N Location: 28038-28278 bp Feature: RT Description: RVT_N Location: 28038-28278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28326-28947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28326-28947 bp Feature: domain Description: GIIM Note: maturase Location: 29001-29232 bp Feature: domain Description: GIIM Note: maturase Location: 29001 -29232 bp Feature: domain Description: HNHc Note: nucleases Location: 29424-29583 bp Feature: domain Description: HNHc Note: nucleases Location: 29424-29583 bp Feature: gene Location: 29845-30066 bp Feature: domain Description: PLDc_Nuc Location: 29947-30058 bp Feature: domain Description: PLDc_Nuc Location: 29947-30058 bp Feature: gene Location: 30241-30492 bp Feature: domain Description: VagC Location: 30277-30490 bp Feature: domain Description: VagC Location: 30277-30490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03759 (isopentenyl-diphosphate Delta-isomerase), nlpD (PRK10871), Peptidase_M23 (pfam01551), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PLDc_Nuc (cd09170), VagC (COG4456)

Seq: ALHY01000182.1 Salmonella enterica subsp. enterica serovar Enteritidis str. SARB17 SEEERB17_043, whole genome shotgun sequence (33982 bp)
Overview 1 RT 1: 29507-33120 bp Neighborhood of RT #1 [29507, 33359] PRK10216 PRK10473 RVT-Retrons Feature: gene Location: 29507-30466 bp Feature: domain Description: PRK10216 Location: 29510-30461 bp Feature: domain Description: PRK102 16 Location: 2 9510-30461 bp Feature: gene Location: 30435-31622 bp Feature: domain Description: PRK10473 Location: 30438-31614 bp Feature: domain Description: PRK10473 Location: 30438-31614 bp Feature: gene Location: 32424-33359 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32535-33120 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32 535-3312 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons