myRT

myRT report for GCA_000330945.1_Cpasteurianum_V1

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Seq: ANZB01000032.1 Clostridium pasteurianum DSM 525 = ATCC 6013 strain DSM 525 Contig032, whole genome shotgun sequence (985 bp)
Overview 1 RT 1: 502-985 bp Neighborhood of RT #1 [502, 985] RVT-GII Feature: gene Location: 502-985 bp Ori: ELP57427.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 751-985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 751 -985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANZB01000016.1 Clostridium pasteurianum DSM 525 = ATCC 6013 strain DSM 525 Contig016, whole genome shotgun sequence (110543 bp)
Overview 1 RT 1: 106980-110171 bp Neighborhood of RT #1 [106980, 110518] BaeS OmpR RVT-GII GIIM RVT-GII Feature: gene Location: 106980-108239 bp Ori: ELP57874.1 Feature: domain Description: BaeS Location: 107295-108225 bp Feature: domain Description: BaeS Location: 1072 95-1082 2 5 bp Feature: gene Location: 108236-108946 bp Ori: ELP57875.1 Feature: domain Description: OmpR Location: 108263-108923 bp Feature: domain Description: OmpR Location: 1082 63-10892 3 bp Feature: gene Location: 109051-109971 bp Ori: ELP57876.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109171-109618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109171-109618 bp Feature: domain Description: GIIM Note: maturase Location: 109690-109915 bp Feature: domain Description: GIIM Note: maturase Location: 109690-109915 bp Feature: gene Location: 109964-110518 bp Ori: ELP57877.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110000-110171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110000-110171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), OmpR (COG0745), RVT-GII, GIIM (pfam08388)

Seq: ANZB01000002.1 Clostridium pasteurianum DSM 525 = ATCC 6013 strain DSM 525 Contig002, whole genome shotgun sequence (497487 bp)
Overview 1 RT 1: 314758-319891 bp Neighborhood of RT #1 [314758, 319905] FeS_nifS NifU_clost RVT-GII GIIM YrrD PerM Feature: gene Location: 314758-315951 bp Ori: ELP60624.1 Feature: domain Description: FeS_nifS Location: 314776-315916 bp Feature: domain Description: FeS_nifS Location: 3 14776-3 15916 bp Feature: gene Location: 315954-316385 bp Ori: ELP60625.1 Feature: domain Description: NifU_clost Location: 315963-316317 bp Feature: domain Description: NifU_clost Location: 3 15963 -3 163 17 bp Feature: gene Location: 316990-318276 bp Ori: ELP60626.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 317239-317923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1723 9-3 17923 bp Feature: domain Description: GIIM Note: maturase Location: 317995-318220 bp Feature: domain Description: GIIM Note: maturase Location: 3 17995-3 18220 bp Feature: gene Location: 318420-318908 bp Ori: ELP60627.1 Feature: domain Description: YrrD Location: 318435-318903 bp Feature: domain Description: YrrD Location: 3 1843 5-3 18903 bp Feature: gene Location: 318892-319905 bp Ori: ELP60628.1 Feature: domain Description: PerM Location: 318907-319891 bp Feature: domain Description: PerM Location: 3 18907-3 19891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FeS_nifS (TIGR03402), NifU_clost (TIGR03419), RVT-GII, GIIM (pfam08388), YrrD (COG3881), PerM (COG0628)

Seq: ANZB01000013.1 Clostridium pasteurianum DSM 525 = ATCC 6013 strain DSM 525 Contig013, whole genome shotgun sequence (136961 bp)
Overview 1 RT 1: 125978-129925 bp Neighborhood of RT #1 [125978, 129999] WrbA WrbA RVT-GII GIIM PRK07714 Feature: gene Location: 125978-126559 bp Ori: ELP58241.1 Feature: domain Description: WrbA Location: 125981-126389 bp Feature: domain Description: WrbA Location: 125981-126389 bp Feature: gene Location: 126552-127223 bp Ori: ELP58242.1 Feature: domain Description: WrbA Location: 126690-126858 bp Feature: domain Description: WrbA Location: 126690-126858 bp Feature: gene Location: 127916-128608 bp Ori: ELP58243.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127940-128243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12794 0-12824 3 bp Feature: domain Description: GIIM Note: maturase Location: 128327-128519 bp Feature: domain Description: GIIM Note: maturase Location: 128327-128519 bp Feature: gene Location: 128791-128979 bp Feature: gene Location: 129514-129999 bp Ori: ELP58245.1 Feature: domain Description: PRK07714 Location: 129781-129925 bp Feature: domain Description: PRK07714 Location: 129781-129925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WrbA (COG0655), RVT-GII, GIIM (pfam08388), PRK07714 (YlxQ family RNA-binding protein)

Seq: ANZB01000006.1 Clostridium pasteurianum DSM 525 = ATCC 6013 strain DSM 525 Contig006, whole genome shotgun sequence (220332 bp)
Overview 1 RT 1: 215893-220270 bp Neighborhood of RT #1 [215893, 220299] trans_reg_C MFS_MdfA_MDR_like RVT-GII RVT-GII Feature: gene Location: 215893-216327 bp Ori: ELP59360.1 Feature: domain Description: trans_reg_C Location: 216121-216319 bp Feature: domain Description: trans_reg_C Location: 216121-216319 bp Feature: gene Location: 216636-217856 bp Ori: ELP59361.1 Feature: domain Description: MFS_MdfA_MDR_like Location: 216711-217824 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 216711-217824 bp Feature: gene Location: 218515-219012 bp Ori: ELP59362.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 218764-219001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 218764-219001 bp Feature: gene Location: 219496-220299 bp Ori: ELP59363.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219751-220270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21975 1-220270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), MFS_MdfA_MDR_like (cd17320), RVT-GII