myRT

myRT report for GCA_000331305.1_ASM33130v1

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Seq: KB217472.1 Calothrix sp. PCC 7103 genomic scaffold Cal7103DRAFT_CPM.12, whole genome shotgun sequence (102424 bp)
Overview 1 RT 1: 29883-36183 bp Neighborhood of RT #1 [29883, 37028] RVT-UG19 COG3636 pfam13191 Feature: gene Location: 29883-30035 bp Feature: gene Location: 30400-30555 bp Feature: gene Location: 32056-33768 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 32437-32938 bp Feature: RT Description: RVT-UG1 9 Note: UG1 9 RT Location: 32437-32938 bp Feature: gene Location: 34357-34680 bp Feature: domain Description: COG3636 Location: 34375-34666 bp Feature: domain Description: COG3636 Location: 34375-34666 bp Feature: gene Location: 35730-37028 bp Feature: domain Description: pfam13191 Location: 35784-36183 bp Feature: domain Description: pfam1 31 91 Location: 35784-361 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG19, COG3636 (DNA-binding prophage protein ), pfam13191 (AAA_16;AAA ATPase domain)

Seq: KB217478.1 Calothrix sp. PCC 7103 genomic scaffold Cal7103DRAFT_CPM.6, whole genome shotgun sequence (8793494 bp)
Overview 1 RT 1: 667578-673229 bp 2 RT 2: 2841352-2848712 bp 3 RT 3: 3118414-3123189 bp 4 RT 4: 3801995-3806273 bp 5 RT 5: 5236325-5244120 bp 6 RT 6: 5938979-5942665 bp 7 RT 7: 5990100-5998248 bp 8 RT 8: 8398617-8402815 bp Neighborhood of RT #1 [667578, 673234] PG_binding_1 PG_binding_1 Tudor-knot Tudor-knot RVT-Retrons TMEM43 COG4446 Neighborhood of RT #2 [2841352, 2848712] RVT-UG4 Peptidase_C14 AAA_16 WD40 WD40 WD40 WD40 KOG1034 Neighborhood of RT #3 [3118414, 3123566] HTH_XRE RVT_N RVT-GII GIIM HNHc Nterm_IS4 DDE_Tnp_1 Neighborhood of RT #4 [3801995, 3806284] RVT_N RVT-GII GIIM HNHc zf-IS66 DDE_Tnp_IS66 Neighborhood of RT #5 [5236325, 5244137] fdx_plant acnB RVT-AbiA COG1479 HicB Neighborhood of RT #6 [5938979, 5942665] RVT_N RVT-GII Neighborhood of RT #7 [5990100, 5998271] MPP_ACP5 MPP_ACP5 N6_N4_Mtase N6_N4_Mtase RVT-DGRs Avd_like COG3825 YfmG Neighborhood of RT #8 [8398617, 8402838] ycf61 FAS1 RVT-DGRs Avd_like YfmG Feature: gene Location: 667578-668087 bp Feature: domain Description: PG_binding_1 Location: 667635-667812 bp Feature: domain Description: PG_binding_1 Location: 667635-667812 bp Feature: domain Description: PG_binding_1 Location: 667869-668031 bp Feature: domain Description: PG_binding_1 Location: 667869-668031 bp Feature: gene Location: 668200-669504 bp Feature: domain Description: Tudor-knot Location: 669190-669316 bp Feature: domain Description: Tudor-knot Location: 669190-669316 bp Feature: domain Description: Tudor-knot Location: 669373-669499 bp Feature: domain Description: Tudor-knot Location: 669373-669499 bp Feature: gene Location: 669994-671394 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 670540-671161 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 670540-671161 bp Feature: gene Location: 671412-672608 bp Feature: domain Description: TMEM43 Location: 671721-672531 bp Feature: domain Description: TMEM43 Location: 67172 1-672 531 bp Feature: gene Location: 672791-673234 bp Feature: domain Description: COG4446 Location: 672830-673229 bp Feature: domain Description: COG4446 Location: 672 830-6732 2 9 bp Feature: gene Location: 2841352-2842812 bp Feature: gene Location: 2842920-2843162 bp Feature: gene Location: 2843152-2843646 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2843269-2843596 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 8432 69-2 843596 bp Feature: gene Location: 2843816-2848582 bp Feature: domain Description: Peptidase_C14 Location: 2843858-2844647 bp Feature: domain Description: Peptidase_C14 Location: 2 843858-2 844647 bp Feature: domain Description: AAA_16 Location: 2844794-2845493 bp Feature: domain Description: AAA_16 Location: 2 844794-2 845493 bp Feature: domain Description: WD40 Location: 2846711-2847161 bp Feature: domain Description: WD40 Location: 2 846711-2 847161 bp Feature: domain Description: WD40 Location: 2847272-2847881 bp Feature: domain Description: WD40 Location: 2 8472 72 -2 847881 bp Feature: domain Description: WD40 Location: 2847923-2848019 bp Feature: domain Description: WD40 Location: 2 84792 3-2 848019 bp Feature: domain Description: WD40 Location: 2848067-2848163 bp Feature: domain Description: WD40 Location: 2 848067-2 848163 bp Feature: domain Description: KOG1034 Location: 2848262-2848463 bp Feature: domain Description: KOG1034 Location: 2 8482 62 -2 848463 bp Feature: gene Location: 2848584-2848712 bp Feature: gene Location: 3118414-3118722 bp Feature: gene Location: 3118990-3119406 bp Feature: domain Description: HTH_XRE Location: 3119197-3119362 bp Feature: domain Description: HTH_XRE Location: 3119197-3119362 bp Feature: gene Location: 3119412-3121073 bp Feature: domain Description: RVT_N Location: 3119460-3119706 bp Feature: domain Description: RVT_N Location: 3119460-3119706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3119754-3120393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3119754-312 0393 bp Feature: domain Description: GIIM Note: maturase Location: 3120471-3120699 bp Feature: domain Description: GIIM Note: maturase Location: 312 0471-312 0699 bp Feature: domain Description: HNHc Note: nucleases Location: 3120900-3121062 bp Feature: domain Description: HNHc Note: nucleases Location: 312 0900-312 1062 bp Feature: gene Location: 3121835-3121987 bp Feature: gene Location: 3122163-3123566 bp Feature: domain Description: Nterm_IS4 Location: 3122223-3122508 bp Feature: domain Description: Nterm_IS4 Location: 312 2 2 2 3-312 2 508 bp Feature: domain Description: DDE_Tnp_1 Location: 3122568-3123189 bp Feature: domain Description: DDE_Tnp_1 Location: 312 2 568-312 3189 bp Feature: gene Location: 3801995-3802234 bp Feature: gene Location: 3802735-3802902 bp Feature: gene Location: 3802953-3804926 bp Feature: domain Description: RVT_N Location: 3803166-3803406 bp Feature: domain Description: RVT_N Location: 3803166-3803406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3803460-3804180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3803460-3804180 bp Feature: domain Description: GIIM Note: maturase Location: 3804246-3804465 bp Feature: domain Description: GIIM Note: maturase Location: 38042 46-3804465 bp Feature: domain Description: HNHc Note: nucleases Location: 3804696-3804861 bp Feature: domain Description: HNHc Note: nucleases Location: 3804696-3804861 bp Feature: gene Location: 3804967-3805704 bp Feature: domain Description: zf-IS66 Location: 3805264-3805396 bp Feature: domain Description: zf-IS66 Location: 38052 64-3805396 bp Feature: gene Location: 3805721-3806284 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3805742-3806273 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3805742 -38062 73 bp Feature: gene Location: 5236325-5236681 bp Feature: domain Description: fdx_plant Location: 5236376-5236658 bp Feature: domain Description: fdx_plant Location: 52 36376-52 36658 bp Feature: gene Location: 5236839-5239484 bp Feature: domain Description: acnB Location: 5236842-5239422 bp Feature: domain Description: acnB Location: 52 36842 -52 3942 2 bp Feature: gene Location: 5239727-5241667 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 5240213-5240726 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 52 402 13-52 4072 6 bp Feature: gene Location: 5241882-5243687 bp Feature: domain Description: COG1479 Location: 5241930-5243298 bp Feature: domain Description: COG1479 Location: 52 41930-52 432 98 bp Feature: gene Location: 5243916-5244137 bp Feature: domain Description: HicB Location: 5243934-5244120 bp Feature: domain Description: HicB Location: 52 43934-52 4412 0 bp Feature: gene Location: 5938979-5939287 bp Feature: gene Location: 5939659-5940375 bp Feature: gene Location: 5940384-5940974 bp Feature: domain Description: RVT_N Location: 5940432-5940678 bp Feature: domain Description: RVT_N Location: 5940432 -5940678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5940726-5940963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 594072 6-5940963 bp Feature: gene Location: 5941472-5941723 bp Feature: gene Location: 5942003-5942665 bp Feature: gene Location: 5990100-5991695 bp Feature: domain Description: MPP_ACP5 Location: 5990268-5990553 bp Feature: domain Description: MPP_ACP5 Location: 59902 68-5990553 bp Feature: domain Description: MPP_ACP5 Location: 5991081-5991468 bp Feature: domain Description: MPP_ACP5 Location: 5991081-5991468 bp Feature: gene Location: 5991819-5993108 bp Feature: domain Description: N6_N4_Mtase Location: 5991939-5992116 bp Feature: domain Description: N6_N4_Mtase Location: 5991939-5992 116 bp Feature: domain Description: N6_N4_Mtase Location: 5992554-5992974 bp Feature: domain Description: N6_N4_Mtase Location: 5992 554-5992 974 bp Feature: gene Location: 5993520-5994569 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5993730-5994369 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5993730-5994369 bp Feature: gene Location: 5994753-5995130 bp Feature: domain Description: Avd_like Location: 5994789-5995095 bp Feature: domain Description: Avd_like Location: 5994789-5995095 bp Feature: gene Location: 5995596-5998271 bp Feature: domain Description: COG3825 Location: 5995680-5996538 bp Feature: domain Description: COG382 5 Location: 5995680-5996538 bp Feature: domain Description: YfmG Location: 5997456-5998248 bp Feature: domain Description: YfmG Location: 5997456-59982 48 bp Feature: gene Location: 8398617-8398853 bp Feature: domain Description: ycf61 Location: 8398632-8398842 bp Feature: domain Description: ycf61 Location: 8398632 -8398842 bp Feature: gene Location: 8398976-8399395 bp Feature: domain Description: FAS1 Location: 8398982-8399390 bp Feature: domain Description: FAS1 Location: 8398982 -8399390 bp Feature: gene Location: 8400169-8401257 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8400409-8401048 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8400409-8401048 bp Feature: gene Location: 8401262-8401702 bp Feature: domain Description: Avd_like Location: 8401382-8401688 bp Feature: domain Description: Avd_like Location: 8401382 -8401688 bp Feature: gene Location: 8402590-8402838 bp Feature: domain Description: YfmG Location: 8402593-8402815 bp Feature: domain Description: YfmG Location: 8402 593-8402 815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PG_binding_1 (pfam01471), Tudor-knot (pfam11717), RVT-Retrons, TMEM43 (pfam07787), COG4446 (Uncharacterized conserved protein, DUF1499 family ), RVT-UG4, Peptidase_C14 (pfam00656), AAA_16 (pfam13191), WD40 (smart00320), KOG1034 (KOG1034, Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily )
HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), fdx_plant (TIGR02008)
acnB (TIGR00117), RVT-AbiA, COG1479 (Uncharacterized conserved protein, contains ParB-like and HNH nuclease domains ), HicB (pfam05534), MPP_ACP5 (cd07378), N6_N4_Mtase (pfam01555), RVT-DGRs, Avd_like (cd16376), COG3825 (CoxE;Uncharacterized conserved protein, contains von Willebrand factor type A (vWA) domain ), YfmG (COG1262)
ycf61 (CHL00191), FAS1 (smart00554)

Seq: KB217481.1 Calothrix sp. PCC 7103 genomic scaffold Cal7103DRAFT_CPM.3, whole genome shotgun sequence (321658 bp)
Overview 1 RT 1: 30230-35677 bp 2 RT 2: 217952-226069 bp Neighborhood of RT #1 [30230, 35715] TIGR03985 M48B_HtpX_like RVT-CRISPR Cas1_I-II-III Neighborhood of RT #2 [217952, 226092] RVT_N RVT-GII GIIM HNHc YfmG RVT-DGRs Avd_like YfmG Feature: gene Location: 30230-31792 bp Feature: domain Description: TIGR03985 Location: 30956-31694 bp Feature: domain Description: TIGR03 985 Location: 3 0956-3 1694 bp Feature: gene Location: 31834-32829 bp Feature: domain Description: M48B_HtpX_like Location: 32005-32827 bp Feature: domain Description: M48B_HtpX_like Location: 3 2005-3 2827 bp Feature: gene Location: 33022-33720 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 33229-33700 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3 3 229-3 3 700 bp Feature: gene Location: 33813-34016 bp Feature: gene Location: 34414-35715 bp Feature: domain Description: Cas1_I-II-III Location: 34723-35677 bp Feature: domain Description: Cas1_I-II-III Location: 3 4723 -3 5677 bp Feature: gene Location: 217952-218257 bp Feature: gene Location: 218639-218911 bp Feature: gene Location: 219054-220574 bp Feature: domain Description: RVT_N Location: 219057-219186 bp Feature: domain Description: RVT_N Location: 219057-219186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219237-219876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21923 7-219876 bp Feature: domain Description: GIIM Note: maturase Location: 219951-220182 bp Feature: domain Description: GIIM Note: maturase Location: 219951-220182 bp Feature: domain Description: HNHc Note: nucleases Location: 220386-220551 bp Feature: domain Description: HNHc Note: nucleases Location: 2203 86-220551 bp Feature: gene Location: 221154-221402 bp Feature: gene Location: 221682-222539 bp Feature: domain Description: YfmG Location: 221718-222516 bp Feature: domain Description: YfmG Location: 221718-222516 bp Feature: gene Location: 223011-223718 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 223035-223509 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 223 03 5-223 509 bp Feature: gene Location: 224076-224411 bp Feature: domain Description: Avd_like Location: 224094-224400 bp Feature: domain Description: Avd_like Location: 224094-224400 bp Feature: gene Location: 224524-226092 bp Feature: domain Description: YfmG Location: 225331-226069 bp Feature: domain Description: YfmG Location: 2253 3 1-226069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR03985 (CRISPR-associated protein, TIGR03985 family), M48B_HtpX_like (cd07339), RVT-CRISPR, Cas1_I-II-III (cl00656), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), YfmG (COG1262), RVT-DGRs
Avd_like (cd16376)

Seq: KB217482.1 Calothrix sp. PCC 7103 genomic scaffold Cal7103DRAFT_CPM.2, whole genome shotgun sequence (209850 bp)
Overview 1 RT 1: 136463-141442 bp Neighborhood of RT #1 [136463, 141442] RVT-Retrons HTH_XRE Feature: gene Location: 136463-137257 bp Feature: gene Location: 137418-138176 bp Feature: gene Location: 138182-139093 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 138347-138875 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13834 7-138875 bp Feature: gene Location: 139080-139388 bp Feature: domain Description: HTH_XRE Location: 139092-139254 bp Feature: domain Description: HTH_XRE Location: 139092-139254 bp Feature: gene Location: 140459-141442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530)

Seq: KB217483.1 Calothrix sp. PCC 7103 genomic scaffold Cal7103DRAFT_CPM.1, whole genome shotgun sequence (1563682 bp)
Overview 1 RT 1: 15722-23202 bp 2 RT 2: 40949-44796 bp Neighborhood of RT #1 [15722, 23306] COG2405 RVT-GII GIIM HNH PinE Zn_ribbon_recom RVT-GII DUF5372 PinE Zn_ribbon_recom HTH_MerR-SF Neighborhood of RT #2 [40949, 44870] DDE_3 HTH_32 RVT-GII GIIM HNHc FAAL PKS_PP PksD Feature: gene Location: 15722-16300 bp Feature: domain Description: COG2405 Location: 15761-16259 bp Feature: domain Description: COG2405 Location: 15 761-1625 9 bp Feature: gene Location: 16382-16555 bp Feature: gene Location: 16759-18054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16771-17194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16771-17194 bp Feature: domain Description: GIIM Note: maturase Location: 17299-17530 bp Feature: domain Description: GIIM Note: maturase Location: 17299-175 30 bp Feature: domain Description: HNH Note: nucleases Location: 17761-17893 bp Feature: domain Description: HNH Note: nucleases Location: 17761-17893 bp Feature: gene Location: 18162-18470 bp Feature: gene Location: 18474-20519 bp Feature: domain Description: PinE Location: 18516-19188 bp Feature: domain Description: PinE Location: 185 16-19188 bp Feature: domain Description: Zn_ribbon_recom Location: 19458-19614 bp Feature: domain Description: Zn_ribbon_recom Location: 1945 8-19614 bp Feature: gene Location: 20528-20737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20531-20726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205 31-20726 bp Feature: gene Location: 20785-21222 bp Feature: domain Description: DUF5372 Location: 20797-21007 bp Feature: domain Description: DUF5 372 Location: 20797-21007 bp Feature: gene Location: 21228-23306 bp Feature: domain Description: PinE Location: 21267-21924 bp Feature: domain Description: PinE Location: 21267-21924 bp Feature: domain Description: Zn_ribbon_recom Location: 22224-22401 bp Feature: domain Description: Zn_ribbon_recom Location: 22224-22401 bp Feature: domain Description: HTH_MerR-SF Location: 23124-23202 bp Feature: domain Description: HTH_MerR-SF Location: 23124-23202 bp Feature: gene Location: 40949-41359 bp Feature: domain Description: DDE_3 Location: 40991-41342 bp Feature: domain Description: DDE_3 Location: 40991-41342 bp Feature: gene Location: 41389-41778 bp Feature: domain Description: HTH_32 Location: 41497-41716 bp Feature: domain Description: HTH_32 Location: 41497-41716 bp Feature: gene Location: 41819-42952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41996-42206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41996-42206 bp Feature: domain Description: GIIM Note: maturase Location: 42272-42491 bp Feature: domain Description: GIIM Note: maturase Location: 42272-42491 bp Feature: domain Description: HNHc Note: nucleases Location: 42719-42887 bp Feature: domain Description: HNHc Note: nucleases Location: 42719-42887 bp Feature: gene Location: 43156-43299 bp Feature: gene Location: 43554-44870 bp Feature: domain Description: FAAL Location: 43557-43941 bp Feature: domain Description: FAAL Location: 435 5 7-43941 bp Feature: domain Description: PKS_PP Location: 44133-44352 bp Feature: domain Description: PKS_PP Location: 44133-4435 2 bp Feature: domain Description: PksD Location: 44409-44796 bp Feature: domain Description: PksD Location: 44409-44796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2405 (Predicted nucleic acid-binding protein, contains PIN domain ), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PinE (COG1961), Zn_ribbon_recom (pfam13408), DUF5372 (pfam17342), HTH_MerR-SF (cl02600), DDE_3 (pfam13358), HTH_32 (pfam13565)
HNHc (smart00507), FAAL (cd05931), PKS_PP (smart00823), PksD (COG3321)