myRT

myRT report for GCA_000331515.1_Photobacterium_marinum_AK15

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Seq: AMZO01000004.1 Photobacterium marinum strain AK15 contig4, whole genome shotgun sequence (122428 bp)
Overview 1 RT 1: 96446-103897 bp Neighborhood of RT #1 [96446, 103923] groES groEL RVT_N RVT-GII GIIM HNHc SapB PRK10446 Feature: gene Location: 96446-96736 bp Ori: ELR67105.1 Feature: domain Description: groES Location: 96449-96734 bp Feature: domain Description: groES Location: 96449-96734 bp Feature: gene Location: 96778-98424 bp Ori: ELR67106.1 Feature: domain Description: groEL Location: 96784-98404 bp Feature: domain Description: groEL Location: 96784-98404 bp Feature: gene Location: 99448-101142 bp Ori: ELR67107.1 Feature: domain Description: RVT_N Location: 99505-99748 bp Feature: domain Description: RVT_N Location: 99505-99748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99793-100438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99793-1 00438 bp Feature: domain Description: GIIM Note: maturase Location: 100489-100723 bp Feature: domain Description: GIIM Note: maturase Location: 1 00489-1 00723 bp Feature: domain Description: HNHc Note: nucleases Location: 100951-101101 bp Feature: domain Description: HNHc Note: nucleases Location: 1 00951 -1 01 1 01 bp Feature: gene Location: 102419-102916 bp Ori: ELR67108.1 Feature: domain Description: SapB Location: 102461-102848 bp Feature: domain Description: SapB Location: 1 02461 -1 02848 bp Feature: gene Location: 103018-103923 bp Ori: ELR67109.1 Feature: domain Description: PRK10446 Location: 103021-103897 bp Feature: domain Description: PRK1 0446 Location: 1 03021 -1 03897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SapB (smart00741), PRK10446 (30S ribosomal protein S6--L-glutamate ligase)

Seq: AMZO01000026.1 Photobacterium marinum strain AK15 contig26, whole genome shotgun sequence (120332 bp)
Overview 1 RT 1: 4657-10065 bp Neighborhood of RT #1 [4657, 10664] HTH_XRE MLTR_LBD MFS_MMR_MDR_like RVT_N RVT-GII GIIM sopB_N Feature: gene Location: 4657-5493 bp Ori: ELR64411.1 Feature: domain Description: HTH_XRE Location: 4693-4906 bp Feature: domain Description: HTH_XRE Location: 4693-4906 bp Feature: domain Description: MLTR_LBD Location: 4981-5446 bp Feature: domain Description: MLTR_LBD Location: 4981-5446 bp Feature: gene Location: 5603-7018 bp Ori: ELR64412.1 Feature: domain Description: MFS_MMR_MDR_like Location: 5654-6890 bp Feature: domain Description: MFS_MMR_MDR_like Location: 5654-6890 bp Feature: gene Location: 7290-8921 bp Ori: ELR64413.1 Feature: domain Description: RVT_N Location: 7497-7740 bp Feature: domain Description: RVT_N Location: 7497-7740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7785-8412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7785-8412 bp Feature: domain Description: GIIM Note: maturase Location: 8472-8697 bp Feature: domain Description: GIIM Note: maturase Location: 8472 -8697 bp Feature: gene Location: 8966-9106 bp Feature: gene Location: 9690-10664 bp Ori: ELR64415.1 Feature: domain Description: sopB_N Location: 9864-10065 bp Feature: domain Description: sopB_N Location: 9864-10065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), MLTR_LBD (pfam17765), MFS_MMR_MDR_like (cd17504), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), sopB_N (cd16394)

Seq: AMZO01000034.1 Photobacterium marinum strain AK15 contig34, whole genome shotgun sequence (56613 bp)
Overview 1 RT 1: 43345-50650 bp Neighborhood of RT #1 [43345, 50650] TIGR03986 CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 43345-45345 bp Ori: ELR63891.1 Feature: domain Description: TIGR03986 Location: 43381-45175 bp Feature: domain Description: TIGR03 986 Location: 43 3 81-45175 bp Feature: gene Location: 45348-47393 bp Feature: gene Location: 47394-50144 bp Ori: ELR63893.1 Feature: domain Description: CRISPR_Cas6 Location: 47853-48216 bp Feature: domain Description: CRISPR_Cas6 Location: 47853 -48216 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 48444-49047 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 48444-49047 bp Feature: domain Description: Cas1_I-II-III Location: 49182-50094 bp Feature: domain Description: Cas1_I-II-III Location: 49182-50094 bp Feature: gene Location: 50146-50436 bp Ori: ELR63894.1 Feature: domain Description: Cas2_I_II_III Location: 50161-50389 bp Feature: domain Description: Cas2_I_II_III Location: 50161-503 89 bp Feature: gene Location: 50537-50650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR03986 (CRISPR-associated protein), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)