myRT

myRT report for GCA_000332075.2_ASM33207v2

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Seq: ALVU02000001.1 Synechocystis sp. PCC 7509 SYN7509DRAFT_scaffold1.1_C, whole genome shotgun sequence (4225608 bp)
Overview 1 RT 1: 1741528-1748107 bp 2 RT 2: 1926283-1933199 bp 3 RT 3: 3620800-3623882 bp Neighborhood of RT #1 [1741528, 1748433] YflT ChaB RVT-Retrons vWA_subgroup WGR_MMR_like PQQ PQQ Neighborhood of RT #2 [1926283, 1933249] PRK04914 PRK04914 PRK04914 RVT-AbiA HicB Neighborhood of RT #3 [3620800, 3623914] FRQ1 RVT-GII McrA DUF5372 PinE Feature: gene Location: 1741528-1741701 bp Feature: gene Location: 1741807-1742601 bp Feature: domain Description: YflT Location: 1741876-1742284 bp Feature: domain Description: YflT Location: 1 741 876-1 742284 bp Feature: domain Description: ChaB Location: 1742425-1742584 bp Feature: domain Description: ChaB Location: 1 742425-1 742584 bp Feature: gene Location: 1743057-1744457 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1743603-1744221 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 743603-1 744221 bp Feature: gene Location: 1744462-1746282 bp Feature: domain Description: vWA_subgroup Location: 1744579-1745086 bp Feature: domain Description: vWA_subgroup Location: 1 744579-1 745086 bp Feature: gene Location: 1747009-1748433 bp Feature: domain Description: WGR_MMR_like Location: 1747027-1747222 bp Feature: domain Description: WGR_MMR_like Location: 1 747027-1 747222 bp Feature: domain Description: PQQ Location: 1747318-1747900 bp Feature: domain Description: PQQ Location: 1 74731 8-1 747900 bp Feature: domain Description: PQQ Location: 1747927-1748107 bp Feature: domain Description: PQQ Location: 1 747927-1 7481 07 bp Feature: gene Location: 1926283-1926975 bp Feature: gene Location: 1927257-1930556 bp Feature: domain Description: PRK04914 Location: 1927302-1927950 bp Feature: domain Description: PRK0491 4 Location: 1 927302-1 927950 bp Feature: domain Description: PRK04914 Location: 1927995-1928508 bp Feature: domain Description: PRK0491 4 Location: 1 927995-1 928508 bp Feature: domain Description: PRK04914 Location: 1928967-1930038 bp Feature: domain Description: PRK0491 4 Location: 1 928967-1 930038 bp Feature: gene Location: 1930654-1932609 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 1931128-1931638 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 1 931 1 28-1 931 638 bp Feature: gene Location: 1932765-1933007 bp Feature: gene Location: 1933025-1933249 bp Feature: domain Description: HicB Location: 1933034-1933199 bp Feature: domain Description: HicB Location: 1 933034-1 9331 99 bp Feature: gene Location: 3620800-3621018 bp Feature: gene Location: 3621144-3621377 bp Feature: domain Description: FRQ1 Location: 3621150-3621363 bp Feature: domain Description: FRQ1 Location: 3621 1 50-3621 363 bp Feature: gene Location: 3621664-3622848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3621682-3622243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3621 682-3622243 bp Feature: domain Description: McrA Location: 3622477-3622798 bp Feature: domain Description: McrA Location: 3622477-3622798 bp Feature: gene Location: 3622866-3623306 bp Feature: domain Description: DUF5372 Location: 3622887-3623100 bp Feature: domain Description: DUF5372 Location: 3622887-36231 00 bp Feature: gene Location: 3623318-3623914 bp Feature: domain Description: PinE Location: 3623357-3623882 bp Feature: domain Description: PinE Location: 3623357-3623882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YflT (pfam11181), ChaB (pfam06150), RVT-Retrons, vWA_subgroup (cd01465), WGR_MMR_like (cd07996), PQQ (smart00564), PRK04914 (RNA polymerase-associated protein RapA), RVT-AbiA, HicB (pfam05534), FRQ1 (COG5126)
RVT-GII, McrA (COG4058), DUF5372 (pfam17342), PinE (COG1961)

Seq: ALVU02000002.1 Synechocystis sp. PCC 7509 SYN7509DRAFT_scaffold2.2_C, whole genome shotgun sequence (332442 bp)
Overview 1 RT 1: 180460-184254 bp Neighborhood of RT #1 [180460, 184271] HTH_26 Phage_pRha RVT_N RVT-GII GIIM McrA HTH_CRP Feature: gene Location: 180460-180675 bp Feature: domain Description: HTH_26 Location: 180478-180655 bp Feature: domain Description: HTH_2 6 Location: 180478-180655 bp Feature: gene Location: 180881-181276 bp Feature: domain Description: Phage_pRha Location: 180932-181196 bp Feature: domain Description: Phage_pRha Location: 180932 -181196 bp Feature: gene Location: 181813-183357 bp Feature: domain Description: RVT_N Location: 181849-182095 bp Feature: domain Description: RVT_N Location: 181849-182 095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182146-182773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182 146-182 773 bp Feature: domain Description: GIIM Note: maturase Location: 182830-182971 bp Feature: domain Description: GIIM Note: maturase Location: 182 830-182 971 bp Feature: domain Description: McrA Location: 183004-183328 bp Feature: domain Description: McrA Location: 183004-18332 8 bp Feature: gene Location: 183318-183845 bp Feature: gene Location: 183906-184271 bp Feature: domain Description: HTH_CRP Location: 184167-184254 bp Feature: domain Description: HTH_CRP Location: 184167-1842 54 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_26 (pfam13443), Phage_pRha (pfam09669), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), HTH_CRP (smart00419)