myRT

myRT report for GCA_000332095.2_ASM33209v2

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Seq: KI913949.1 Leptolyngbya sp. PCC 6406 genomic scaffold LEP6406DRAFT_scaffold1.1, whole genome shotgun sequence (5473176 bp)
Overview 1 RT 1: 1586620-1590236 bp 2 RT 2: 2908446-2913095 bp Neighborhood of RT #1 [1586620, 1590265] PIN_VapC-like RVT_N RVT-GII GIIM HNHc Uma2 Neighborhood of RT #2 [2908446, 2913095] PIN_RfVapC2-like VagC RVT-UG25 DDE_Tnp_1 Feature: gene Location: 1586620-1586850 bp Feature: domain Description: PIN_VapC-like Location: 1586632-1586830 bp Feature: domain Description: PIN_VapC-like Location: 1 586632-1 586830 bp Feature: gene Location: 1587083-1587250 bp Feature: gene Location: 1587304-1589037 bp Feature: domain Description: RVT_N Location: 1587358-1587604 bp Feature: domain Description: RVT_N Location: 1 587358-1 587604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1587652-1588330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 587652-1 588330 bp Feature: domain Description: GIIM Note: maturase Location: 1588393-1588615 bp Feature: domain Description: GIIM Note: maturase Location: 1 588393-1 58861 5 bp Feature: domain Description: HNHc Note: nucleases Location: 1588840-1588999 bp Feature: domain Description: HNHc Note: nucleases Location: 1 588840-1 588999 bp Feature: gene Location: 1589070-1589333 bp Feature: gene Location: 1589681-1590265 bp Feature: domain Description: Uma2 Location: 1589717-1590236 bp Feature: domain Description: Uma2 Location: 1 58971 7-1 590236 bp Feature: gene Location: 2908446-2908847 bp Feature: domain Description: PIN_RfVapC2-like Location: 2908458-2908839 bp Feature: domain Description: PIN_RfVapC2-like Location: 2908458-2908839 bp Feature: gene Location: 2908848-2909075 bp Feature: domain Description: VagC Location: 2908872-2909073 bp Feature: domain Description: VagC Location: 2908872-2909073 bp Feature: gene Location: 2909212-2910930 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 2909368-2909764 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 2909368-2909764 bp Feature: gene Location: 2911001-2912374 bp Feature: domain Description: DDE_Tnp_1 Location: 2911478-2912036 bp Feature: domain Description: DDE_Tnp_1 Location: 291 1 478-291 2036 bp Feature: gene Location: 2912943-2913095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_VapC-like (cd18715), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Uma2 (pfam05685), PIN_RfVapC2-like (cd18734), VagC (COG4456), RVT-UG25, DDE_Tnp_1 (pfam01609)

Seq: KI913950.1 Leptolyngbya sp. PCC 6406 genomic scaffold LEP6406DRAFT_scaffold2.2, whole genome shotgun sequence (196465 bp)
Overview 1 RT 1: 34346-39152 bp Neighborhood of RT #1 [34346, 39152] 23S_rRNA_IVP Cas2_I_II_III RVT-CRISPR Cas1_I-II-III HTH_XRE AAA_16 Feature: gene Location: 34346-34765 bp Feature: domain Description: 23S_rRNA_IVP Location: 34373-34679 bp Feature: domain Description: 2 3S_rRNA_IVP Location: 34373-34679 bp Feature: gene Location: 34780-35058 bp Feature: domain Description: Cas2_I_II_III Location: 34789-35017 bp Feature: domain Description: Cas2 _I_II_III Location: 34789-35017 bp Feature: gene Location: 35058-37037 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 35247-35856 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 352 47-35856 bp Feature: domain Description: Cas1_I-II-III Location: 36042-36999 bp Feature: domain Description: Cas1_I-II-III Location: 36042 -36999 bp Feature: gene Location: 37237-38643 bp Feature: domain Description: HTH_XRE Location: 37312-37438 bp Feature: domain Description: HTH_XRE Location: 37312 -37438 bp Feature: domain Description: AAA_16 Location: 37522-37945 bp Feature: domain Description: AAA_16 Location: 3752 2 -37945 bp Feature: gene Location: 38649-39152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 23S_rRNA_IVP (pfam05635), Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), HTH_XRE (smart00530), AAA_16 (pfam13191)

Seq: KI913951.1 Leptolyngbya sp. PCC 6406 genomic scaffold LEP6406DRAFT_scaffold3.3, whole genome shotgun sequence (107316 bp)
Overview 1 RT 1: 92390-98619 bp Neighborhood of RT #1 [92390, 98648] YfmG Avd_like RVT-DGRs RVT-DGRs YfmG Feature: gene Location: 92390-94975 bp Feature: domain Description: YfmG Location: 94226-94970 bp Feature: domain Description: YfmG Location: 94226-94970 bp Feature: gene Location: 95354-95722 bp Feature: domain Description: Avd_like Location: 95372-95678 bp Feature: domain Description: Avd_like Location: 953 72-95678 bp Feature: gene Location: 95782-96375 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 95992-96304 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 95992-963 04 bp Feature: gene Location: 96648-96797 bp Feature: gene Location: 96951-97385 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96954-97107 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96954-97107 bp Feature: gene Location: 97423-97713 bp Feature: gene Location: 97812-98648 bp Feature: domain Description: YfmG Location: 97896-98619 bp Feature: domain Description: YfmG Location: 97896-98619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Avd_like (cd16376), RVT-DGRs