myRT

myRT report for GCA_000332155.1_ASM33215v1

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Seq: KB235904.1 Oscillatoria formosa PCC 6407 genomic scaffold Oscil6407scaffold_7, whole genome shotgun sequence (2506686 bp)
Overview 1 RT 1: 110500-118274 bp Neighborhood of RT #1 [110500, 118312] Sigma70_r4_2 AAA_16 PRK00331 RVT-Retrons COG3484 AbrB Gneg_AbrB_dup Feature: gene Location: 110500-112008 bp Feature: domain Description: Sigma70_r4_2 Location: 110545-110644 bp Feature: domain Description: Sigma70_r4_2 Location: 1 1 0545-1 1 0644 bp Feature: domain Description: AAA_16 Location: 111007-111484 bp Feature: domain Description: AAA_1 6 Location: 1 1 1 007-1 1 1 484 bp Feature: gene Location: 112212-114101 bp Feature: domain Description: PRK00331 Location: 112215-114099 bp Feature: domain Description: PRK00331 Location: 1 1 221 5-1 1 4099 bp Feature: gene Location: 114502-115902 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 115048-115666 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 5048-1 1 5666 bp Feature: gene Location: 115990-116760 bp Feature: domain Description: COG3484 Location: 115993-116731 bp Feature: domain Description: COG3484 Location: 1 1 5993-1 1 6731 bp Feature: gene Location: 117116-118312 bp Feature: domain Description: AbrB Location: 117227-117413 bp Feature: domain Description: AbrB Location: 1 1 7227-1 1 741 3 bp Feature: domain Description: Gneg_AbrB_dup Location: 117824-118274 bp Feature: domain Description: Gneg_AbrB_dup Location: 1 1 7824-1 1 8274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sigma70_r4_2 (pfam08281), AAA_16 (pfam13191), PRK00331 (isomerizing glutamine--fructose-6-phosphate transaminase), RVT-Retrons, COG3484 (Predicted proteasome-type protease ), AbrB (pfam05145), Gneg_AbrB_dup (TIGR03082)

Seq: KB235906.1 Oscillatoria formosa PCC 6407 genomic scaffold Oscil6407scaffold_9, whole genome shotgun sequence (142300 bp)
Overview 1 RT 1: 38048-44493 bp Neighborhood of RT #1 [38048, 44513] RVT_N RVT-GII RVT_N RVT-GII GIIM HNHc PHA02518 Feature: gene Location: 38048-38293 bp Feature: gene Location: 38316-38876 bp Feature: gene Location: 39730-40608 bp Feature: domain Description: RVT_N Location: 39775-40015 bp Feature: domain Description: RVT_N Location: 39775-40015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40060-40510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40060-40510 bp Feature: gene Location: 41021-41185 bp Feature: gene Location: 41284-42999 bp Feature: domain Description: RVT_N Location: 41326-41572 bp Feature: domain Description: RVT_N Location: 4132 6-41572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41614-42283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41614-42 2 83 bp Feature: domain Description: GIIM Note: maturase Location: 42382-42595 bp Feature: domain Description: GIIM Note: maturase Location: 42 382 -42 595 bp Feature: domain Description: HNHc Note: nucleases Location: 42799-42952 bp Feature: domain Description: HNHc Note: nucleases Location: 42 799-42 952 bp Feature: gene Location: 43642-43884 bp Feature: gene Location: 43884-44513 bp Feature: domain Description: PHA02518 Location: 43893-44493 bp Feature: domain Description: PHA02 518 Location: 43893-44493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PHA02518 (ParA-like protein; Provisional)

Seq: KB235908.1 Oscillatoria formosa PCC 6407 genomic scaffold Oscil6407scaffold_11, whole genome shotgun sequence (156931 bp)
Overview 1 RT 1: 85387-93629 bp Neighborhood of RT #1 [85387, 94564] NACHT RVT-CRISPR cas1 RAMPs Cmr6_III-B Feature: gene Location: 85387-85899 bp Feature: gene Location: 86004-89597 bp Feature: domain Description: NACHT Location: 86418-86901 bp Feature: domain Description: NACHT Location: 86418-86901 bp Feature: gene Location: 89735-91738 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 89924-90533 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 89924-9053 3 bp Feature: domain Description: cas1 Location: 90743-91706 bp Feature: domain Description: cas1 Location: 90743 -91706 bp Feature: gene Location: 92533-92760 bp Feature: gene Location: 92849-94564 bp Feature: domain Description: RAMPs Location: 93044-93308 bp Feature: domain Description: RAMPs Location: 93 044-93 3 08 bp Feature: domain Description: Cmr6_III-B Location: 93518-93629 bp Feature: domain Description: Cmr6_III-B Location: 93 518-93 629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NACHT (pfam05729), RVT-CRISPR, cas1 (TIGR00287), RAMPs (pfam03787), Cmr6_III-B (cd09661)