myRT

myRT report for GCA_000332175.1_ASM33217v1

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Seq: KB235910.1 Pseudanabaena sp. PCC 6802 genomic scaffold Pse6802_scaffold_1, whole genome shotgun sequence (881644 bp)
Overview 1 RT 1: 571406-576290 bp 2 RT 2: 877722-881642 bp Neighborhood of RT #1 [571406, 576298] ispG_gcpE RVT-GII GIIM gshA_cyano Neighborhood of RT #2 [877722, 881642] CarboxypepD_reg CarboxypepD_reg RVT_N RVT-GII Feature: gene Location: 571406-572644 bp Feature: domain Description: ispG_gcpE Location: 571493-572618 bp Feature: domain Description: ispG_gcpE Location: 571 493-57261 8 bp Feature: gene Location: 572871-573182 bp Feature: gene Location: 573243-574574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573519-574137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57351 9-5741 37 bp Feature: domain Description: GIIM Note: maturase Location: 574182-574389 bp Feature: domain Description: GIIM Note: maturase Location: 5741 82-574389 bp Feature: gene Location: 574739-575008 bp Feature: gene Location: 575150-576298 bp Feature: domain Description: gshA_cyano Location: 575159-576290 bp Feature: domain Description: gshA_cyano Location: 5751 59-576290 bp Feature: gene Location: 877722-877880 bp Feature: gene Location: 878505-879815 bp Feature: domain Description: CarboxypepD_reg Location: 878601-878802 bp Feature: domain Description: CarboxypepD_reg Location: 878601 -878802 bp Feature: domain Description: CarboxypepD_reg Location: 879057-879213 bp Feature: domain Description: CarboxypepD_reg Location: 879057-87921 3 bp Feature: gene Location: 880548-881249 bp Feature: domain Description: RVT_N Location: 880584-880830 bp Feature: domain Description: RVT_N Location: 880584-880830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880881-881247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880881 -881 247 bp Feature: gene Location: 881499-881642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ispG_gcpE (TIGR00612), RVT-GII, GIIM (pfam08388), gshA_cyano (TIGR02048), CarboxypepD_reg (pfam13620), RVT_N (pfam13655)

Seq: KB235911.1 Pseudanabaena sp. PCC 6802 genomic scaffold Pse6802_scaffold_2, whole genome shotgun sequence (108934 bp)
Overview 1 RT 1: 26599-31339 bp 2 RT 2: 75469-81127 bp Neighborhood of RT #1 [26599, 31395] YgaK ParAB_family RVT-GII GIIM Lipase_3 Neighborhood of RT #2 [75469, 81585] COG5550 SWIM RVT-Retrons WGR PQQ PQQ HemolysinCabind HemolysinCabind Feature: gene Location: 26599-26757 bp Feature: domain Description: YgaK Location: 26602-26749 bp Feature: domain Description: YgaK Location: 2 6602 -2 6749 bp Feature: gene Location: 27008-28066 bp Feature: domain Description: ParAB_family Location: 27017-27776 bp Feature: domain Description: ParAB_family Location: 2 7017-2 7776 bp Feature: gene Location: 28326-29657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28602-29220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8602 -2 92 2 0 bp Feature: domain Description: GIIM Note: maturase Location: 29265-29472 bp Feature: domain Description: GIIM Note: maturase Location: 2 92 65-2 9472 bp Feature: gene Location: 29979-30203 bp Feature: gene Location: 30361-31395 bp Feature: domain Description: Lipase_3 Location: 30652-31339 bp Feature: domain Description: Lipase_3 Location: 30652 -31339 bp Feature: gene Location: 75469-75840 bp Feature: domain Description: COG5550 Location: 75502-75811 bp Feature: domain Description: COG5550 Location: 75502 -75811 bp Feature: gene Location: 75906-77549 bp Feature: domain Description: SWIM Location: 77427-77520 bp Feature: domain Description: SWIM Location: 7742 7-7752 0 bp Feature: gene Location: 77830-79260 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 78382-79000 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 78382 -79000 bp Feature: gene Location: 79275-80696 bp Feature: domain Description: WGR Location: 79290-79530 bp Feature: domain Description: WGR Location: 792 90-79530 bp Feature: domain Description: PQQ Location: 79584-80163 bp Feature: domain Description: PQQ Location: 79584-80163 bp Feature: domain Description: PQQ Location: 80199-80379 bp Feature: domain Description: PQQ Location: 80199-80379 bp Feature: gene Location: 80851-81585 bp Feature: domain Description: HemolysinCabind Location: 80929-81019 bp Feature: domain Description: HemolysinCabind Location: 8092 9-81019 bp Feature: domain Description: HemolysinCabind Location: 81025-81127 bp Feature: domain Description: HemolysinCabind Location: 8102 5-8112 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YgaK (COG1773), ParAB_family (cd02042), RVT-GII, GIIM (pfam08388), Lipase_3 (pfam01764), COG5550 (Predicted aspartyl protease ), SWIM (pfam04434), RVT-Retrons, WGR (smart00773), PQQ (smart00564)
HemolysinCabind (pfam00353)

Seq: KB235914.1 Pseudanabaena sp. PCC 6802 genomic scaffold Pse6802_scaffold_5, whole genome shotgun sequence (4576495 bp)
Overview 1 RT 1: 192301-195433 bp 2 RT 2: 573772-578971 bp 3 RT 3: 1985576-1993580 bp 4 RT 4: 2606850-2617168 bp 5 RT 5: 3283201-3286036 bp 6 RT 6: 3679026-3683454 bp 7 RT 7: 4571237-4575585 bp Neighborhood of RT #1 [192301, 195433] Avd_like RVT-DGRs YfmG Neighborhood of RT #2 [573772, 579024] RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat DNase_NucA_NucB RHS_repeat RHS_repeat RVT_N RVT-GII McrA RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat Neighborhood of RT #3 [1985576, 1993580] RHS_repeat RHS_repeat YD_repeat_2x RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat YD_repeat_2x RHS_repeat Rhs_assc_core RVT-GII GIIM Neighborhood of RT #4 [2606850, 2617170] HicB RVT-GII GIIM HTH_XRE dcm COG3547 COG3293 COG3293 RVT-GII GIIM DDE_Tnp_1_4 Neighborhood of RT #5 [3283201, 3286036] RVT-GII GIIM Asp_protease_2 Neighborhood of RT #6 [3679026, 3683489] COG3293 COG3293 RHS_repeat RVT-GII RVT-GII McrA DDE_Tnp_4 DDE_Tnp_4 Neighborhood of RT #7 [4571237, 4575585] RVT-GII GIIM RVT-GII GIIM PemK_toxin Feature: gene Location: 192301-192783 bp Feature: gene Location: 192768-193133 bp Feature: domain Description: Avd_like Location: 192798-193104 bp Feature: domain Description: Avd_like Location: 192798-193 104 bp Feature: gene Location: 193130-194236 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 193343-194024 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 193 3 43 -194024 bp Feature: gene Location: 194226-195032 bp Feature: domain Description: YfmG Location: 194325-195021 bp Feature: domain Description: YfmG Location: 1943 25-195021 bp Feature: gene Location: 195236-195433 bp Feature: gene Location: 573772-576015 bp Feature: domain Description: RHS_repeat Location: 573781-573859 bp Feature: domain Description: RHS_repeat Location: 573 781-573 859 bp Feature: domain Description: RHS_repeat Location: 573883-573994 bp Feature: domain Description: RHS_repeat Location: 573 883 -573 994 bp Feature: domain Description: RHS_repeat Location: 574075-574174 bp Feature: domain Description: RHS_repeat Location: 574075-574174 bp Feature: domain Description: RHS_repeat Location: 574261-574363 bp Feature: domain Description: RHS_repeat Location: 574261-5743 63 bp Feature: domain Description: RHS_repeat Location: 574384-574504 bp Feature: domain Description: RHS_repeat Location: 5743 84-574504 bp Feature: domain Description: RHS_repeat Location: 574537-574630 bp Feature: domain Description: RHS_repeat Location: 57453 7-57463 0 bp Feature: domain Description: RHS_repeat Location: 574690-574792 bp Feature: domain Description: RHS_repeat Location: 574690-574792 bp Feature: domain Description: RHS_repeat Location: 575029-575107 bp Feature: domain Description: RHS_repeat Location: 575029-575107 bp Feature: domain Description: DNase_NucA_NucB Location: 575614-575932 bp Feature: domain Description: DNase_NucA_NucB Location: 575614-57593 2 bp Feature: gene Location: 576022-576351 bp Feature: domain Description: RHS_repeat Location: 576163-576244 bp Feature: domain Description: RHS_repeat Location: 576163 -576244 bp Feature: domain Description: RHS_repeat Location: 576280-576346 bp Feature: domain Description: RHS_repeat Location: 576280-5763 46 bp Feature: gene Location: 576305-577816 bp Feature: domain Description: RVT_N Location: 576341-576587 bp Feature: domain Description: RVT_N Location: 5763 41-576587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 576638-577232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57663 8-57723 2 bp Feature: domain Description: McrA Location: 577475-577787 bp Feature: domain Description: McrA Location: 577475-577787 bp Feature: gene Location: 577905-578279 bp Feature: gene Location: 578362-579024 bp Feature: domain Description: RHS_repeat Location: 578368-578428 bp Feature: domain Description: RHS_repeat Location: 5783 68-578428 bp Feature: domain Description: RHS_repeat Location: 578476-578575 bp Feature: domain Description: RHS_repeat Location: 578476-578575 bp Feature: domain Description: RHS_repeat Location: 578626-578710 bp Feature: domain Description: RHS_repeat Location: 578626-578710 bp Feature: domain Description: RHS_repeat Location: 578728-578830 bp Feature: domain Description: RHS_repeat Location: 578728-57883 0 bp Feature: domain Description: RHS_repeat Location: 578878-578971 bp Feature: domain Description: RHS_repeat Location: 578878-578971 bp Feature: gene Location: 1985576-1986133 bp Feature: gene Location: 1986307-1991364 bp Feature: domain Description: RHS_repeat Location: 1987366-1987432 bp Feature: domain Description: RHS_repeat Location: 19873 66-198743 2 bp Feature: domain Description: RHS_repeat Location: 1987471-1987558 bp Feature: domain Description: RHS_repeat Location: 1987471-1987558 bp Feature: domain Description: YD_repeat_2x Location: 1987582-1987702 bp Feature: domain Description: YD_repeat_2x Location: 1987582-1987702 bp Feature: domain Description: RHS_repeat Location: 1987855-1987960 bp Feature: domain Description: RHS_repeat Location: 1987855-1987960 bp Feature: domain Description: RHS_repeat Location: 1987978-1988092 bp Feature: domain Description: RHS_repeat Location: 1987978-1988092 bp Feature: domain Description: RHS_repeat Location: 1988119-1988230 bp Feature: domain Description: RHS_repeat Location: 1988119-198823 0 bp Feature: domain Description: RHS_repeat Location: 1988248-1988359 bp Feature: domain Description: RHS_repeat Location: 1988248-19883 59 bp Feature: domain Description: RHS_repeat Location: 1988473-1988575 bp Feature: domain Description: RHS_repeat Location: 1988473 -1988575 bp Feature: domain Description: RHS_repeat Location: 1988623-1988725 bp Feature: domain Description: RHS_repeat Location: 1988623 -1988725 bp Feature: domain Description: RHS_repeat Location: 1988749-1988848 bp Feature: domain Description: RHS_repeat Location: 1988749-1988848 bp Feature: domain Description: RHS_repeat Location: 1988875-1988974 bp Feature: domain Description: RHS_repeat Location: 1988875-1988974 bp Feature: domain Description: RHS_repeat Location: 1989001-1989100 bp Feature: domain Description: RHS_repeat Location: 1989001-1989100 bp Feature: domain Description: RHS_repeat Location: 1989127-1989226 bp Feature: domain Description: RHS_repeat Location: 1989127-1989226 bp Feature: domain Description: RHS_repeat Location: 1989253-1989340 bp Feature: domain Description: RHS_repeat Location: 1989253 -19893 40 bp Feature: domain Description: RHS_repeat Location: 1989394-1989481 bp Feature: domain Description: RHS_repeat Location: 19893 94-1989481 bp Feature: domain Description: RHS_repeat Location: 1989577-1989643 bp Feature: domain Description: RHS_repeat Location: 1989577-1989643 bp Feature: domain Description: YD_repeat_2x Location: 1989754-1989808 bp Feature: domain Description: YD_repeat_2x Location: 1989754-1989808 bp Feature: domain Description: RHS_repeat Location: 1989841-1989928 bp Feature: domain Description: RHS_repeat Location: 1989841-1989928 bp Feature: domain Description: Rhs_assc_core Location: 1990468-1990702 bp Feature: domain Description: Rhs_assc_core Location: 1990468-1990702 bp Feature: gene Location: 1991357-1992688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1991633-1992251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199163 3 -1992251 bp Feature: domain Description: GIIM Note: maturase Location: 1992296-1992503 bp Feature: domain Description: GIIM Note: maturase Location: 1992296-1992503 bp Feature: gene Location: 1992853-1993122 bp Feature: gene Location: 1993152-1993580 bp Feature: gene Location: 2606850-2607101 bp Feature: domain Description: HicB Location: 2606853-2607039 bp Feature: domain Description: HicB Location: 2606853 -260703 9 bp Feature: gene Location: 2607113-2607361 bp Feature: gene Location: 2607419-2608012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2607425-2607572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2607425-2607572 bp Feature: domain Description: GIIM Note: maturase Location: 2607620-2607830 bp Feature: domain Description: GIIM Note: maturase Location: 2607620-260783 0 bp Feature: gene Location: 2608128-2608352 bp Feature: domain Description: HTH_XRE Location: 2608143-2608314 bp Feature: domain Description: HTH_XRE Location: 2608143 -26083 14 bp Feature: gene Location: 2608442-2609635 bp Feature: domain Description: dcm Location: 2608523-2609579 bp Feature: domain Description: dcm Location: 2608523 -2609579 bp Feature: gene Location: 2611617-2612687 bp Feature: domain Description: COG3547 Location: 2611668-2612610 bp Feature: domain Description: COG3 547 Location: 2611668-2612610 bp Feature: gene Location: 2612954-2613745 bp Feature: domain Description: COG3293 Location: 2612969-2613293 bp Feature: domain Description: COG3 293 Location: 2612969-2613 293 bp Feature: domain Description: COG3293 Location: 2613341-2613722 bp Feature: domain Description: COG3 293 Location: 2613 3 41-2613 722 bp Feature: gene Location: 2614148-2615479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2614424-2615042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2614424-2615042 bp Feature: domain Description: GIIM Note: maturase Location: 2615087-2615294 bp Feature: domain Description: GIIM Note: maturase Location: 2615087-2615294 bp Feature: gene Location: 2615614-2616264 bp Feature: gene Location: 2616715-2617170 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2616757-2617168 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2616757-2617168 bp Feature: gene Location: 3283201-3283398 bp Feature: gene Location: 3283504-3283773 bp Feature: gene Location: 3283938-3285269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3284214-3284832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 284214-3 28483 2 bp Feature: domain Description: GIIM Note: maturase Location: 3284877-3285084 bp Feature: domain Description: GIIM Note: maturase Location: 3 284877-3 285084 bp Feature: gene Location: 3285403-3285825 bp Feature: domain Description: Asp_protease_2 Location: 3285487-3285715 bp Feature: domain Description: Asp_protease_2 Location: 3 285487-3 285715 bp Feature: gene Location: 3285818-3286036 bp Feature: gene Location: 3679026-3679817 bp Feature: domain Description: COG3293 Location: 3679041-3679365 bp Feature: domain Description: COG3 293 Location: 3 679041-3 6793 65 bp Feature: domain Description: COG3293 Location: 3679413-3679794 bp Feature: domain Description: COG3 293 Location: 3 679413 -3 679794 bp Feature: gene Location: 3679960-3680535 bp Feature: domain Description: RHS_repeat Location: 3680101-3680191 bp Feature: domain Description: RHS_repeat Location: 3 680101-3 680191 bp Feature: gene Location: 3680489-3681643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3680531-3680888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 68053 1-3 680888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3680894-3681059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 680894-3 681059 bp Feature: domain Description: McrA Location: 3681302-3681614 bp Feature: domain Description: McrA Location: 3 6813 02-3 681614 bp Feature: gene Location: 3682077-3682673 bp Feature: domain Description: DDE_Tnp_4 Location: 3682188-3682638 bp Feature: domain Description: DDE_Tnp_4 Location: 3 682188-3 68263 8 bp Feature: gene Location: 3682893-3683489 bp Feature: domain Description: DDE_Tnp_4 Location: 3683004-3683454 bp Feature: domain Description: DDE_Tnp_4 Location: 3 683 004-3 683 454 bp Feature: gene Location: 4571237-4571506 bp Feature: gene Location: 4571589-4571732 bp Feature: gene Location: 4571793-4572626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4572054-4572189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4572054-4572189 bp Feature: domain Description: GIIM Note: maturase Location: 4572234-4572444 bp Feature: domain Description: GIIM Note: maturase Location: 457223 4-4572444 bp Feature: gene Location: 4572759-4573007 bp Feature: gene Location: 4573296-4573730 bp Feature: gene Location: 4574068-4574661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4574074-4574224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4574074-4574224 bp Feature: domain Description: GIIM Note: maturase Location: 4574269-4574479 bp Feature: domain Description: GIIM Note: maturase Location: 4574269-4574479 bp Feature: gene Location: 4574994-4575266 bp Feature: domain Description: PemK_toxin Location: 4575000-4575231 bp Feature: domain Description: PemK_toxin Location: 4575000-457523 1 bp Feature: gene Location: 4575361-4575585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, YfmG (COG1262), RHS_repeat (pfam05593), DNase_NucA_NucB (pfam14040), RVT_N (pfam13655), RVT-GII, McrA (COG4058), YD_repeat_2x (TIGR01643), Rhs_assc_core (TIGR03696)
GIIM (pfam08388), HicB (pfam05534), HTH_XRE (smart00530), dcm (TIGR00675), COG3547 (Transposase ), COG3293 (Transposase ), DDE_Tnp_1_4 (pfam13701), Asp_protease_2 (pfam13650), DDE_Tnp_4 (pfam13359), PemK_toxin (pfam02452)