myRT

myRT report for GCA_000332195.1_ASM33219v1

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Seq: KB235917.1 Pleurocapsa sp. PCC 7319 genomic scaffold Pleur7319scaffold_2, whole genome shotgun sequence (103222 bp)
Overview 1 RT 1: 20014-23172 bp Neighborhood of RT #1 [20014, 23306] XhlA XhlA RVT-GII InsA DDE_Tnp_IS66 Feature: gene Location: 20014-20436 bp Feature: domain Description: XhlA Location: 20128-20179 bp Feature: domain Description: XhlA Location: 201 28-201 79 bp Feature: domain Description: XhlA Location: 20182-20401 bp Feature: domain Description: XhlA Location: 201 82-20401 bp Feature: gene Location: 20586-20774 bp Feature: gene Location: 21030-21455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21096-21435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 096-21 435 bp Feature: gene Location: 21515-21721 bp Feature: domain Description: InsA Location: 21533-21719 bp Feature: domain Description: InsA Location: 21 533-21 71 9 bp Feature: gene Location: 21783-23306 bp Feature: domain Description: DDE_Tnp_IS66 Location: 22404-23172 bp Feature: domain Description: DDE_Tnp_IS66 Location: 22404-231 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XhlA (pfam10779), RVT-GII, InsA (COG3677), DDE_Tnp_IS66 (pfam03050)

Seq: KB235922.1 Pleurocapsa sp. PCC 7319 genomic scaffold Pleur7319scaffold_7, whole genome shotgun sequence (6388442 bp)
Overview 1 RT 1: 2292722-2296149 bp 2 RT 2: 2336074-2349693 bp Neighborhood of RT #1 [2292722, 2296149] InsA RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [2336074, 2349755] DDE_3 COG3415 RVT-GII HTH_29 HTH_33 DDE_3 PRiA4_ORF3 RVT_N RVT-GII GIIM HNHc RVT_N RVT-GII RVT-GII McrA COG5421 INT_FimBE_like Feature: gene Location: 2292722-2293108 bp Feature: domain Description: InsA Location: 2292725-2292995 bp Feature: domain Description: InsA Location: 2 2 92 72 5-2 2 92 995 bp Feature: gene Location: 2293158-2293394 bp Feature: gene Location: 2293603-2295252 bp Feature: RT Description: RVT_N Location: 2293654-2293897 bp Feature: RT Description: RVT_N Location: 2 2 93654-2 2 93897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2293939-2294554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 93939-2 2 94554 bp Feature: domain Description: GIIM Note: maturase Location: 2294614-2294839 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 94614-2 2 94839 bp Feature: domain Description: HNHc Note: nucleases Location: 2295049-2295223 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 95049-2 2 952 2 3 bp Feature: gene Location: 2295279-2295470 bp Feature: gene Location: 2296015-2296149 bp Feature: gene Location: 2336074-2336661 bp Feature: domain Description: DDE_3 Location: 2336116-2336530 bp Feature: domain Description: DDE_3 Location: 2 336116-2 336530 bp Feature: gene Location: 2336714-2337148 bp Feature: domain Description: COG3415 Location: 2336813-2337134 bp Feature: domain Description: COG3415 Location: 2 336813-2 337134 bp Feature: gene Location: 2337737-2338030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2337800-2338007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 337800-2 338007 bp Feature: gene Location: 2338063-2338554 bp Feature: domain Description: HTH_29 Location: 2338159-2338339 bp Feature: domain Description: HTH_2 9 Location: 2 338159-2 338339 bp Feature: domain Description: HTH_33 Location: 2338378-2338552 bp Feature: domain Description: HTH_33 Location: 2 338378-2 338552 bp Feature: gene Location: 2338569-2339126 bp Feature: domain Description: DDE_3 Location: 2338608-2338998 bp Feature: domain Description: DDE_3 Location: 2 338608-2 338998 bp Feature: gene Location: 2340666-2341328 bp Feature: domain Description: PRiA4_ORF3 Location: 2340693-2341101 bp Feature: domain Description: PRiA4_ORF3 Location: 2 340693-2 341101 bp Feature: gene Location: 2341442-2342746 bp Feature: gene Location: 2343664-2345313 bp Feature: RT Description: RVT_N Location: 2343715-2343958 bp Feature: RT Description: RVT_N Location: 2 343715-2 343958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2344000-2344615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 344000-2 344615 bp Feature: domain Description: GIIM Note: maturase Location: 2344675-2344900 bp Feature: domain Description: GIIM Note: maturase Location: 2 344675-2 344900 bp Feature: domain Description: HNHc Note: nucleases Location: 2345110-2345284 bp Feature: domain Description: HNHc Note: nucleases Location: 2 345110-2 3452 84 bp Feature: gene Location: 2345750-2347378 bp Feature: RT Description: RVT_N Location: 2345798-2346044 bp Feature: RT Description: RVT_N Location: 2 345798-2 346044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2346095-2346521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 346095-2 34652 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2346521-2346689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 34652 1-2 346689 bp Feature: domain Description: McrA Location: 2346926-2347271 bp Feature: domain Description: McrA Location: 2 34692 6-2 3472 71 bp Feature: gene Location: 2347458-2349170 bp Feature: domain Description: COG5421 Location: 2347557-2348991 bp Feature: domain Description: COG542 1 Location: 2 347557-2 348991 bp Feature: gene Location: 2349357-2349755 bp Feature: domain Description: INT_FimBE_like Location: 2349369-2349693 bp Feature: domain Description: INT_FimBE_like Location: 2 349369-2 349693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsA (COG3677), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DDE_3 (pfam13358), COG3415 (Transposase ), HTH_29 (pfam13551), HTH_33 (pfam13592), PRiA4_ORF3 (pfam07929)
McrA (COG4058), COG5421 (Transposase ), INT_FimBE_like (cd01197)