myRT

myRT report for GCA_000332215.1_ASM33221v1

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Seq: ALWB01000016.1 Pseudanabaena biceps PCC 7429 scaffold_00016, whole genome shotgun sequence (40117 bp)
Overview 1 RT 1: 10078-14747 bp Neighborhood of RT #1 [10078, 14779] TIGR02436 Cas2_I_II_III RVT-CRISPR Cas1_I-II-III TIGR02436 Feature: gene Location: 10078-10467 bp Ori: ELS34186.1 Feature: domain Description: TIGR02436 Location: 10096-10414 bp Feature: domain Description: TIGR02436 Location: 1 0096-1 041 4 bp Feature: gene Location: 11875-12150 bp Ori: ELS34187.1 Feature: domain Description: Cas2_I_II_III Location: 11884-12112 bp Feature: domain Description: Cas2_I_II_III Location: 1 1 884-1 21 1 2 bp Feature: gene Location: 12151-14244 bp Ori: ELS34188.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 12358-12964 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 2358-1 2964 bp Feature: domain Description: Cas1_I-II-III Location: 13249-14209 bp Feature: domain Description: Cas1 _I-II-III Location: 1 3249-1 4209 bp Feature: gene Location: 14411-14779 bp Ori: ELS34189.1 Feature: domain Description: TIGR02436 Location: 14429-14747 bp Feature: domain Description: TIGR02436 Location: 1 4429-1 4747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02436 (four helix bundle protein), Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: ALWB01000040.1 Pseudanabaena biceps PCC 7429 scaffold_00040, whole genome shotgun sequence (21938 bp)
Overview 1 RT 1: 5850-10798 bp Neighborhood of RT #1 [5850, 10815] COG4249 YfmG Avd_like RVT-DGRs DUF820 Uma2 Feature: gene Location: 5850-7571 bp Ori: ELS33487.1 Feature: domain Description: COG4249 Location: 5856-6684 bp Feature: domain Description: COG42 49 Location: 5856-6684 bp Feature: domain Description: YfmG Location: 6768-7554 bp Feature: domain Description: YfmG Location: 6768-7554 bp Feature: gene Location: 8032-8412 bp Ori: ELS33488.1 Feature: domain Description: Avd_like Location: 8050-8356 bp Feature: domain Description: Avd_like Location: 8050-8356 bp Feature: gene Location: 8369-9409 bp Ori: ELS33489.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8576-9221 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8576-92 2 1 bp Feature: gene Location: 9398-10063 bp Ori: ELS33490.1 Feature: domain Description: DUF820 Location: 9485-9881 bp Feature: domain Description: DUF82 0 Location: 9485-9881 bp Feature: gene Location: 10219-10815 bp Ori: ELS33491.1 Feature: domain Description: Uma2 Location: 10294-10798 bp Feature: domain Description: Uma2 Location: 102 94-10798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4249 (Uncharacterized protein, contains caspase domain ), YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, DUF820, Uma2 (pfam05685)

Seq: ALWB01000233.1 Pseudanabaena biceps PCC 7429 scaffold_00233, whole genome shotgun sequence (7563 bp)
Overview 1 RT 1: 218-5392 bp Neighborhood of RT #1 [218, 5532] DUF2887 RVT_N RVT-GII McrA DUF4351 YtxK Feature: gene Location: 218-1267 bp Feature: gene Location: 1362-1952 bp Ori: ELS30914.1 Feature: domain Description: DUF2887 Location: 1371-1932 bp Feature: domain Description: DUF2887 Location: 13 71-193 2 bp Feature: gene Location: 2009-3553 bp Ori: ELS30915.1 Feature: domain Description: RVT_N Location: 2045-2291 bp Feature: domain Description: RVT_N Location: 2045-2291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2342-2969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 42-2969 bp Feature: domain Description: McrA Location: 3200-3524 bp Feature: domain Description: McrA Location: 3 200-3 524 bp Feature: gene Location: 4132-4443 bp Ori: ELS30916.1 Feature: domain Description: DUF4351 Location: 4246-4420 bp Feature: domain Description: DUF43 51 Location: 4246-4420 bp Feature: gene Location: 4501-5532 bp Ori: ELS30917.1 Feature: domain Description: YtxK Location: 5038-5392 bp Feature: domain Description: YtxK Location: 503 8-53 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2887 (pfam11103), RVT_N (pfam13655), RVT-GII, McrA (COG4058), DUF4351 (pfam14261), YtxK (COG0827)

Seq: ALWB01000094.1 Pseudanabaena biceps PCC 7429 scaffold_00094, whole genome shotgun sequence (19535 bp)
Overview 1 RT 1: 3661-10038 bp Neighborhood of RT #1 [3661, 10038] ANK ANK ANK ANK Ank_2 DUF4253 PLDc_N TPR TPR_2 RVT-Retrons Feature: gene Location: 3661-6204 bp Ori: ELS32432.1 Feature: domain Description: ANK Location: 3688-4033 bp Feature: domain Description: ANK Location: 3688-4 033 bp Feature: domain Description: ANK Location: 4033-4213 bp Feature: domain Description: ANK Location: 4 033-4 213 bp Feature: domain Description: ANK Location: 4429-4819 bp Feature: domain Description: ANK Location: 4 4 29-4 819 bp Feature: domain Description: ANK Location: 4897-5254 bp Feature: domain Description: ANK Location: 4 897-5254 bp Feature: domain Description: Ank_2 Location: 5338-5560 bp Feature: domain Description: Ank_2 Location: 5338-5560 bp Feature: domain Description: DUF4253 Location: 5893-6202 bp Feature: domain Description: DUF4 253 Location: 5893-6202 bp Feature: gene Location: 6490-7251 bp Ori: ELS32433.1 Feature: domain Description: PLDc_N Location: 6544-6658 bp Feature: domain Description: PLDc_N Location: 654 4 -6658 bp Feature: domain Description: TPR Location: 6781-7063 bp Feature: domain Description: TPR Location: 6781-7063 bp Feature: domain Description: TPR_2 Location: 7081-7153 bp Feature: domain Description: TPR_2 Location: 7081-7153 bp Feature: gene Location: 7466-8902 bp Ori: ELS32434.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8012-8630 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8012-8630 bp Feature: gene Location: 9460-9657 bp Feature: gene Location: 9739-10038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ANK (smart00248), Ank_2 (pfam12796), DUF4253 (pfam14062), PLDc_N (pfam13396), TPR (smart00028), TPR_2 (pfam07719), RVT-Retrons