myRT

myRT report for GCA_000332235.1_ASM33223v1

Download annotations/find similar RTs

Seq: CM001775.1 Geminocystis herdmanii PCC 6308 chromosome, whole genome shotgun sequence (4263418 bp)
Overview 1 RT 1: 1968475-1974626 bp 2 RT 2: 2186423-2189910 bp 3 RT 3: 2942342-2948821 bp 4 RT 4: 3035238-3040157 bp 5 RT 5: 3080274-3084522 bp 6 RT 6: 3098551-3104808 bp 7 RT 7: 3472959-3479580 bp Neighborhood of RT #1 [1968475, 1974626] COG5549 RVT_N RVT-GII GIIM McrA DDE_Tnp_1 Neighborhood of RT #2 [2186423, 2189912] HTH_OrfB_IS605 RVT_N RVT-GII InsQ PRK07417 Neighborhood of RT #3 [2942342, 2948940] CRR7 CutA1 RVT_N RVT-GII GIIM McrA BcsQ AarF Neighborhood of RT #4 [3035238, 3040157] COG4639 WYL RVT-Retrons Neighborhood of RT #5 [3080274, 3084527] arsM arsM RVT_N RVT-GII GIIM McrA GMP_PMI Neighborhood of RT #6 [3098551, 3104822] PRK02812 PLN02754 RVT_N RVT-GII GIIM McrA DPM1_like GtrA Neighborhood of RT #7 [3472959, 3479588] RVT-UG25 HEAT_2 UgpA Feature: gene Location: 1968475-1969230 bp Feature: domain Description: COG5549 Location: 1968511-1969204 bp Feature: domain Description: COG5549 Location: 1 96851 1 -1 969204 bp Feature: gene Location: 1969238-1969432 bp Feature: gene Location: 1969994-1971781 bp Feature: domain Description: RVT_N Location: 1970075-1970321 bp Feature: domain Description: RVT_N Location: 1 970075-1 970321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1970363-1971026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 970363-1 971 026 bp Feature: domain Description: GIIM Note: maturase Location: 1971128-1971359 bp Feature: domain Description: GIIM Note: maturase Location: 1 971 1 28-1 971 359 bp Feature: domain Description: McrA Location: 1971464-1971761 bp Feature: domain Description: McrA Location: 1 971 464-1 971 761 bp Feature: gene Location: 1971960-1973312 bp Feature: domain Description: DDE_Tnp_1 Location: 1972341-1972938 bp Feature: domain Description: DDE_Tnp_1 Location: 1 972341 -1 972938 bp Feature: gene Location: 1974495-1974626 bp Feature: gene Location: 2186423-2186761 bp Feature: domain Description: HTH_OrfB_IS605 Location: 2186426-2186561 bp Feature: domain Description: HTH_OrfB_IS605 Location: 21 86426-21 86561 bp Feature: gene Location: 2186849-2186998 bp Feature: gene Location: 2187345-2188250 bp Feature: domain Description: RVT_N Location: 2187393-2187639 bp Feature: domain Description: RVT_N Location: 21 87393-21 87639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2187681-2188242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 87681 -21 88242 bp Feature: gene Location: 2188220-2189020 bp Feature: domain Description: InsQ Location: 2188232-2188922 bp Feature: domain Description: InsQ Location: 21 88232-21 88922 bp Feature: gene Location: 2189076-2189912 bp Feature: domain Description: PRK07417 Location: 2189079-2189910 bp Feature: domain Description: PRK0741 7 Location: 21 89079-21 8991 0 bp Feature: gene Location: 2942342-2942596 bp Feature: domain Description: CRR7 Location: 2942345-2942591 bp Feature: domain Description: CRR7 Location: 2942345-2942591 bp Feature: gene Location: 2942910-2943179 bp Feature: domain Description: CutA1 Location: 2942934-2943171 bp Feature: domain Description: CutA1 Location: 2942934-29431 71 bp Feature: gene Location: 2943997-2945769 bp Feature: domain Description: RVT_N Location: 2944027-2944273 bp Feature: domain Description: RVT_N Location: 2944027-2944273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2944315-2944981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294431 5-2944981 bp Feature: domain Description: GIIM Note: maturase Location: 2945080-2945314 bp Feature: domain Description: GIIM Note: maturase Location: 2945080-294531 4 bp Feature: domain Description: McrA Location: 2945404-2945695 bp Feature: domain Description: McrA Location: 2945404-2945695 bp Feature: gene Location: 2946004-2946909 bp Feature: domain Description: BcsQ Location: 2946007-2946901 bp Feature: domain Description: BcsQ Location: 2946007-2946901 bp Feature: gene Location: 2947087-2948940 bp Feature: domain Description: AarF Location: 2947285-2948821 bp Feature: domain Description: AarF Location: 2947285-2948821 bp Feature: gene Location: 3035238-3037310 bp Feature: domain Description: COG4639 Location: 3035253-3035682 bp Feature: domain Description: COG4639 Location: 3035253-3035682 bp Feature: domain Description: WYL Location: 3036582-3037296 bp Feature: domain Description: WYL Location: 3036582-3037296 bp Feature: gene Location: 3037340-3038119 bp Feature: gene Location: 3038161-3039270 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3038377-3038983 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3038377-3038983 bp Feature: gene Location: 3039273-3039461 bp Feature: gene Location: 3039648-3040157 bp Feature: gene Location: 3080274-3081155 bp Feature: domain Description: arsM Location: 3080355-3080661 bp Feature: domain Description: arsM Location: 3080355-3080661 bp Feature: domain Description: arsM Location: 3080766-3081051 bp Feature: domain Description: arsM Location: 3080766-3081 051 bp Feature: gene Location: 3081309-3081449 bp Feature: gene Location: 3081465-3083270 bp Feature: domain Description: RVT_N Location: 3081513-3081759 bp Feature: domain Description: RVT_N Location: 3081 51 3-3081 759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3081801-3082467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3081 801 -3082467 bp Feature: domain Description: GIIM Note: maturase Location: 3082566-3082800 bp Feature: domain Description: GIIM Note: maturase Location: 3082566-3082800 bp Feature: domain Description: McrA Location: 3082851-3083184 bp Feature: domain Description: McrA Location: 3082851 -30831 84 bp Feature: gene Location: 3083851-3084084 bp Feature: gene Location: 3084129-3084527 bp Feature: domain Description: GMP_PMI Location: 3084159-3084522 bp Feature: domain Description: GMP_PMI Location: 30841 59-3084522 bp Feature: gene Location: 3098551-3099546 bp Feature: domain Description: PRK02812 Location: 3098566-3099544 bp Feature: domain Description: PRK0281 2 Location: 3098566-3099544 bp Feature: gene Location: 3099651-3100739 bp Feature: domain Description: PLN02754 Location: 3099657-3100737 bp Feature: domain Description: PLN02754 Location: 3099657-31 00737 bp Feature: gene Location: 3100806-3102599 bp Feature: domain Description: RVT_N Location: 3100854-3101094 bp Feature: domain Description: RVT_N Location: 31 00854-31 01 094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3101142-3101808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 01 1 42-31 01 808 bp Feature: domain Description: GIIM Note: maturase Location: 3101907-3102141 bp Feature: domain Description: GIIM Note: maturase Location: 31 01 907-31 021 41 bp Feature: domain Description: McrA Location: 3102225-3102519 bp Feature: domain Description: McrA Location: 31 02225-31 0251 9 bp Feature: gene Location: 3103319-3103576 bp Feature: gene Location: 3103647-3104822 bp Feature: domain Description: DPM1_like Location: 3103728-3104397 bp Feature: domain Description: DPM1 _like Location: 31 03728-31 04397 bp Feature: domain Description: GtrA Location: 3104418-3104808 bp Feature: domain Description: GtrA Location: 31 0441 8-31 04808 bp Feature: gene Location: 3472959-3473777 bp Feature: gene Location: 3473791-3474327 bp Feature: gene Location: 3474342-3477527 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 3475830-3476256 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 3475830-3476256 bp Feature: domain Description: HEAT_2 Location: 3476955-3477102 bp Feature: domain Description: HEAT_2 Location: 3476955-34771 02 bp Feature: gene Location: 3477954-3478229 bp Feature: gene Location: 3478719-3479588 bp Feature: domain Description: UgpA Location: 3478737-3479580 bp Feature: domain Description: UgpA Location: 3478737-3479580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5549 (Predicted Zn-dependent protease ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), DDE_Tnp_1 (pfam01609), HTH_OrfB_IS605 (pfam12323), InsQ (COG0675), PRK07417 (prephenate/arogenate dehydrogenase), CRR7 (pfam12095)
CutA1 (pfam03091), BcsQ (COG1192), AarF (COG0661), COG4639 (Predicted kinase ), WYL (pfam13280), RVT-Retrons, arsM (PRK11873), GMP_PMI (TIGR01479), PRK02812 (ribose-phosphate pyrophosphokinase; Provisional), PLN02754 (chorismate synthase)
DPM1_like (cd06442), GtrA (pfam04138), RVT-UG25, HEAT_2 (pfam13646), UgpA (COG1175)